PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678411205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 26535.3 Da PI: 8.6292 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.9 | 6.6e-28 | 4 | 106 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C++++ + p++q++++ +++k++G++ +++l++a ++ + r+++++sl+yeA+ r+ +PvyG+vg++ ++++ql+q+++e+ 678411205 4 SCNGCRVLRKGCSDACTIRESLewirsPDAQANATVFLAKFYGRTGLVNLINAGKPPRlRQAIFRSLLYEACGRIVNPVYGSVGLLESGKWQLCQEAVEA 103 6*****************************************************66666**************************************999 PP DUF260 95 all 97 +l 678411205 104 VLK 106 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.472 | 3 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-22 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MRLSCNGCRV LRKGCSDACT IRESLEWIRS PDAQANATVF LAKFYGRTGL VNLINAGKPP 60 RLRQAIFRSL LYEACGRIVN PVYGSVGLLE SGKWQLCQEA VEAVLKGVPI EKIAASDAPA 120 LKGCDIRHVC KKDKKQFSGA MALNRVRPSS RFKRSGARQQ LESEEDRSPS HGSTLSHQSA 180 AAEITERESA CRSSQGTDVE SGGENDVVDI ELDLSLGLGP VKAAVKPKAI AACGGACEMG 240 LGLHPQPS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678411205 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012840975.1 | 7e-88 | PREDICTED: LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 8e-72 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A022R367 | 2e-86 | A0A022R367_ERYGU; Uncharacterized protein | ||||
STRING | Migut.L00314.1.p | 3e-87 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-72 | LOB domain-containing protein 41 |