PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678410015
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 471aa    MW: 52085.7 Da    PI: 4.6348
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678410015genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34e-193986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ede+lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l
        678410015 39 KGPWTPREDEILVDYVNKHGEGNWNAVQKHTGLSRCGKSCRLRWANHL 86
                     79******************************************9986 PP
2Myb_DNA-binding48.71.7e-1592135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ l++++++++G++ W++ a++++ gRt++++k++w++
        678410015  92 KGPFSEEEERLILELHAKMGNK-WARMAAELP-GRTDNEIKNFWNT 135
                      79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5623486IPR017930Myb domain
SuperFamilySSF466891.47E-3136133IPR009057Homeodomain-like
SMARTSM007179.0E-173888IPR001005SANT/Myb domain
PfamPF002492.8E-173986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-254093IPR009057Homeodomain-like
CDDcd001673.67E-134186No hitNo description
PROSITE profilePS5129425.53687141IPR017930Myb domain
SMARTSM007171.4E-1691139IPR001005SANT/Myb domain
PfamPF002497.7E-1592135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2594140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MCLNRKGDEA MLPHESIDSP SADDDDSGVN GGSNSPVKKG PWTPREDEIL VDYVNKHGEG  60
NWNAVQKHTG LSRCGKSCRL RWANHLRPDL KKGPFSEEEE RLILELHAKM GNKWARMAAE  120
LPGRTDNEIK NFWNTRIKRR QRAGLRIYPE DVCAEFRNEN QGDEIDSHST GQEYPSEVAA  180
FEGFEIPTVE FHSLSQPLYS SKLISSIKIP EIPARLIFGQ GRQPCYGDRS VCSTLHLSKP  240
PPVPELLYSN HNNPTFGSFT GVNNLTGDGC LEIGQPLGFS SFYDHDSVSD QAISPNLFPD  300
DHTMLTDTSE LPSLQNQVGG WGIPTPSFPM PVFHDTSIQT TQVENTCMFP PPNSGLLDDV  360
IHELEANFNT NTFLSPGTSY DPTLVAHMVN DSNQNAHENV CGYDMVSPVG LSSPSALYDS  420
SPFSINSFEE PKDANVFQVI TPPLLSPNGI FQEETRDAGS NANSTMTRSA W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-33391407107B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMap678410015
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090254.11e-121transcription factor GAMYB-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.18e-67myb domain protein 33