PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678408709 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 375aa MW: 41688 Da PI: 4.597 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.5e-19 | 117 | 166 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAaka+++ +++++g 678408709 117 QYRGIRQRP-WGKWAAEIRDPKK---GVRVWLGTFNTAEEAAKAYDEEARRIRG 166 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.28E-32 | 117 | 176 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-32 | 117 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-21 | 117 | 175 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.604 | 117 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-38 | 117 | 180 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-12 | 118 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MCGGAIISDV LPPLSRTSRR LTAALLWGSD SGELAGKGNR GGYHSKPLRS PPLVSLDDDF 60 EADFQDFKDH SDVDDEFDAK GSFEFAASAF KGGLRSLDSC ESDEECEKPS KRKRKNQYRG 120 IRQRPWGKWA AEIRDPKKGV RVWLGTFNTA EEAAKAYDEE ARRIRGKKAK VNFPQDAPHT 180 GARRDLKSNS QKAISQENRD FDHPPANEME YMKMLNNGYY DSLTFFDEKP EIKPKCLNGV 240 YAPTTNVEPI AHTLSDDYFS PDQGSNSFYC SDLGWSETEI CATVPEISAV NSADIEVGQA 300 QFLSNGSPQN SLPRIESSDA TAFDSQMKMY QVSYLDNNWV STIDALLDGD ATQNTGHSMD 360 LWSFDDVLDI AGCAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-22 | 117 | 174 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678408709 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072679.1 | 1e-145 | ethylene-responsive transcription factor RAP2-12-like isoform X1 | ||||
TrEMBL | A0A2G9GX08 | 1e-144 | A0A2G9GX08_9LAMI; Uncharacterized protein | ||||
STRING | Migut.I01124.1.p | 1e-134 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 8e-52 | related to AP2 12 |