PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678408449

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

TCP

Protein Properties

Length: 395aa MW: 41545.1 Da PI: 7.4438

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678408449	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.8	2.2e-39	73	160	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG ++d++tieWLlqqa+pai+++tgt++++a+++ ++s +s +s+ s+ 678408449 73 PPKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGNKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNVSLRSRGSTTLSAP 160 679*****************************************************************99976666666666333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.9E-36	77	166	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.675	78	132	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MENSRPSPPN APPFTAEPPS SSSGPSTHLL HRLPFLHAPS SASGVDASLN MSTRADPPLD 60 QPSTSVAPTE KPPPKRSTKD RHTKVDGRGR RIRMPALCAA RVFQLTRELG NKSDGETIEW 120 LLQQAEPAII AATGTGTIPA NFSSLNVSLR SRGSTTLSAP ASNAAALHSF HGGLGLAQAH 180 HFYEENLGFQ HPPPTHLLPD SGHSGGAPPA EGTENYLGKR FRDPSGGGAA GENANSPSNK 240 QFKPQLSSQS PMSLVRHPNM APPAPIWAMA PTPTSTTAAA ATSGVPSTTA QIWPFAAANT 300 LQAPLHFLQR FNYPGNMIEP LQLMMQHQAA PPPQPPSHHL GLGVHTDSNL GMLSALHSFS 360 RTGLSMNSAN PNVPNTDHHG GSDNSDDDGH SSSDQ

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MENSRPSPPN APPFTAEPPS SSSGPSTHLL HRLPFLHAPS SASGVDASLN MSTRADPPLD  60
QPSTSVAPTE KPPPKRSTKD RHTKVDGRGR RIRMPALCAA RVFQLTRELG NKSDGETIEW  120
LLQQAEPAII AATGTGTIPA NFSSLNVSLR SRGSTTLSAP ASNAAALHSF HGGLGLAQAH  180
HFYEENLGFQ HPPPTHLLPD SGHSGGAPPA EGTENYLGKR FRDPSGGGAA GENANSPSNK  240
QFKPQLSSQS PMSLVRHPNM APPAPIWAMA PTPTSTTAAA ATSGVPSTTA QIWPFAAANT  300
LQAPLHFLQR FNYPGNMIEP LQLMMQHQAA PPPQPPSHHL GLGVHTDSNL GMLSALHSFS  360
RTGLSMNSAN PNVPNTDHHG GSDNSDDDGH SSSDQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678408449

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087706.1	9e-99	transcription factor TCP8
TrEMBL	A0A2G9HCW8	1e-93	A0A2G9HCW8_9LAMI; Uncharacterized protein
STRING	Migut.B00803.1.p	7e-86	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-53	TCP family protein