PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678407105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 312aa MW: 35218.9 Da PI: 6.6733 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.5 | 3.1e-18 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l+++++++G g+W++ +r+ g++Rt+k+c++rw++yl 678407105 25 RGPWTVEEDFALINYIARHGEGRWNSLSRCAGLKRTGKSCRLRWLNYL 72 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.6e-16 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ 678407105 78 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.052 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-31 | 23 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-16 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.81E-12 | 27 | 72 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 40 | 49 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 23.246 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-15 | 78 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-23 | 80 | 126 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEQMKTCSYG QSEEDSSAGG GDLRRGPWTV EEDFALINYI ARHGEGRWNS LSRCAGLKRT 60 GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR 120 TRVQKHAKQL KCDVNSKQFK DTMRYLWMPR LVERIQASSA SAAVNDGVPV MGSSSSSSTT 180 SHLSDHSINT SMGGQAHVFG GFESGAWKIS SADLSSDSFG TPATEQTDFC NSNQYQVTLD 240 SGYQLPYVTQ QQPMNSQSGH AYLNQGPEFI DHNSSNQWIS GGGAPEDWYL GDDMWFFQHQ 300 EQPEANPLFS FS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 19 | 125 | 1 | 106 | B-MYB |
1h8a_C | 1e-24 | 22 | 119 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678407105 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021691580.1 | 1e-106 | transcription factor MYB108 | ||||
TrEMBL | A0A1J6IUC8 | 1e-104 | A0A1J6IUC8_NICAT; Transcription factor myb108 | ||||
STRING | XP_009791846.1 | 1e-103 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 2e-85 | myb domain protein 78 |