PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678406272

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

BBR-BPC

Protein Properties

Length: 305aa MW: 33595.4 Da PI: 9.9972

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678406272	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	261	6.7e-80	21	305	6	301
GAGA_bind 6 sre.rnkg.yyepaaslkenlglqlmssiaerdaki.....rernl....alsekkaavaerdmaflq.rdkalaernkalverdnkllalllvensla. 92 +++ rn++ y p+ + k+++glqlmss+ e+ ++ l + s++ + + ++ +f+ d +++e ++k+++++ v+++++ 678406272 21 NMNfRNWAfVYPPTMTHKSHIGLQLMSSVDEKPLFAgvannHQPALpsilTPSANGGQFRNQMSDFQVpVDYWMNE-------IKDKYTSVVSVSKNSSg 113 5677**667777999********76654436665544443100012222222233334554326889998.......56677777776666666 PP GAGA_bind 93 .salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaek 191 ++p++ + + +t+s +s+ p l d++ + e+ ++++ e+ + +++ + + k++ + k +k kk++ ++ ++k 678406272 114 yYHQPPSFGLSLETSSYHSVYD---PVLVDQPKN--ENAVCRFVEVTS---EQGNGNMVAVNGGVT---MKRRGAGD----KVSRKGKKPR---NMVTPK 195 799**********997766...666666655..222222233222...222222222111221...11222222....2234444554...57899 PP GAGA_bind 192 ksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAk 291 k+ ++ +ngvs+++s++P+PvC+CtG++r CY+WG+GGWqSaCCtt +S yPLP+stkrrgaRi grKmS gafkk+LekL+++Gydls+p+DL++hWAk 678406272 196 KCAEVIINGVSMNISKVPIPVCTCTGTPRACYRWGSGGWQSACCTTCLSLYPLPMSTKRRGARICGRKMSVGAFKKVLEKLSSQGYDLSTPIDLRTHWAK 295 ************************************************************************************************** PP GAGA_bind 292 HGtnkfvtir 301 HGtnkfvtir 678406272 296 HGTNKFVTIR 305 *******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.1E-92	1	305	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	7.7E-78	20	305	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MDDNGNGNWN ATVDSRNIGA NMNFRNWAFV YPPTMTHKSH IGLQLMSSVD EKPLFAGVAN 60 NHQPALPSIL TPSANGGQFR NQMSDFQVPV DYWMNEIKDK YTSVVSVSKN SSGYYHQPPS 120 FGLSLETSSY HSVYDPVLVD QPKNENAVCR FVEVTSEQGN GNMVAVNGGV TMKRRGAGDK 180 VSRKGKKPRN MVTPKKCAEV IINGVSMNIS KVPIPVCTCT GTPRACYRWG SGGWQSACCT 240 TCLSLYPLPM STKRRGARIC GRKMSVGAFK KVLEKLSSQG YDLSTPIDLR THWAKHGTNK 300 FVTIR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678406272

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083223.1	1e-110	protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A2G9HQ94	1e-104	A0A2G9HQ94_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10048	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	9e-70	basic pentacysteine 2