PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678405766
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 732aa    MW: 80840.2 Da    PI: 5.73
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678405766genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.91e-1959114156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  678405766  59 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 114
                688999***********************************************998 PP
2START217.16e-682474671206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ela +a++el+++a+a++p+W + +    e + ++e+ ++f+++ +      ++ea+r+s+vv+m++++lve+l+d++ qW+  +     +a+tlev+s+
  678405766 247 ELAVTAMEELIRMAQAGDPLWITNPdssfETLSEEEYFRIFPRGIGprplcLKSEASRESAVVIMNHVNLVEILMDVN-QWSSVFSsivsRAMTLEVLST 345
                57899********************999***************999********************************.********************* PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+ds ++ +    + R++++pSg+li++++ng+skvt vehv++++r++h++
  678405766 346 GvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHADGTWAVVDVSLDSLRPTS----ISRCRRRPSGYLIQELPNGYSKVTCVEHVEVDDRSVHAI 441
                ******************************************************976....7************************************** PP

                HHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 181 lrslvksglaegaktwvatlqrqcek 206
                ++ lv+sgla+ga++wvatl+rqce+
  678405766 442 YKALVNSGLAFGAQRWVATLDRQCER 467
                ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-2143110IPR009057Homeodomain-like
SuperFamilySSF466898.77E-1945116IPR009057Homeodomain-like
PROSITE profilePS5007116.60156116IPR001356Homeobox domain
SMARTSM003895.2E-1857120IPR001356Homeobox domain
PfamPF000462.1E-1759114IPR001356Homeobox domain
CDDcd000864.75E-1859117No hitNo description
PROSITE profilePS5084844.77238470IPR002913START domain
SuperFamilySSF559614.19E-37239469No hitNo description
CDDcd088751.22E-124242466No hitNo description
SMARTSM002341.3E-65247467IPR002913START domain
PfamPF018521.3E-56248467IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-5344466IPR023393START-like domain
SuperFamilySSF559612.75E-20487598No hitNo description
SuperFamilySSF559612.75E-20626696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MFQQNMFDHH LLDIAGGGHR SPENELNLIR EDEYESKSGT DIMENASGDD QDPDQRAKKK  60
RYHRHTQHQI QEMESFFKEC PHPDDKQRKE LGRRLGLEPL QVKFWFQNKR TQMKAQHERH  120
ENTQLRNENE KLRAENIRYK EALSNATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDK  180
ISGIAAKYVG KQALTFPHLP PGTTRSVDLG VGSFGGQSGL TGDIYGASDL LRSVSGPSDA  240
DKPVIIELAV TAMEELIRMA QAGDPLWITN PDSSFETLSE EEYFRIFPRG IGPRPLCLKS  300
EASRESAVVI MNHVNLVEIL MDVNQWSSVF SSIVSRAMTL EVLSTGVAGN YNGALQVMTA  360
EFQVPSPLVP TRENYFVRYC KQHADGTWAV VDVSLDSLRP TSISRCRRRP SGYLIQELPN  420
GYSKVTCVEH VEVDDRSVHA IYKALVNSGL AFGAQRWVAT LDRQCERLAS VMANNISAGD  480
VGVISSPEGR KSMLKLAERM VVSFCTGVGA STAHTWTTLS GSGADDVRVM TRKSMDDPGR  540
PPGIVLSAAT SFWLPIPPKR VFDFLRDENS RSEWDILSNG GLVQEMAHIA NGRDPGNAVS  600
LLRVNVRTLL SLQLVSFNLR TNEGSVLQSA NSSQSNMLIL QESCTDSTGS YVIYAPVDIV  660
AMNVVLSGGD PDYVALLPSG FAILPDGPNH QSVTTILPLG SLDEGDDSEL CVLGKMSRAH  720
LWENARVEKN GQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678405766
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086174.20.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLS8CYM20.0S8CYM2_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]