PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678405601
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 525aa    MW: 59014.8 Da    PI: 7.2824
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678405601genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.44.5e-2099145148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde++ ++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
        678405601  99 KGPWTQEEDEKIRELVTKHGPTKWSVIAKSLP-GRIGKQCRERWHNHL 145
                      79******************************.*************97 PP

2Myb_DNA-binding49.21.2e-15151194146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++W+ +E++ l+ a++ +G++ W+  a+ ++ gRt++ +k++w++
        678405601 151 KDAWSLDEELTLLSAHRTHGNR-WAELAKLLP-GRTDNAIKNHWNS 194
                      679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.85695IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-659103IPR009057Homeodomain-like
CDDcd001670.002986093No hitNo description
PROSITE profilePS500904.7046393IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.4E-116999IPR009057Homeodomain-like
PROSITE profilePS5129431.44994149IPR017930Myb domain
SMARTSM007173.7E-1898147IPR001005SANT/Myb domain
SuperFamilySSF466892.75E-3099197IPR009057Homeodomain-like
PfamPF002492.1E-1899145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-28100148IPR009057Homeodomain-like
CDDcd001671.20E-15101145No hitNo description
Gene3DG3DSA:1.10.10.601.4E-21149200IPR009057Homeodomain-like
PROSITE profilePS5129419.671150200IPR017930Myb domain
SMARTSM007175.9E-15150198IPR001005SANT/Myb domain
PfamPF002492.9E-14151194IPR001005SANT/Myb domain
CDDcd001671.11E-10153196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MAEVKSDDFY LERKEPAVSL SSSVSENSGL LKSPGISSPT STSPSRRRAT GPIRRAKGGW  60
TPEEVGLFDY KHAAEFFPDR SEVQCLHRWQ KVLNPELIKG PWTQEEDEKI RELVTKHGPT  120
KWSVIAKSLP GRIGKQCRER WHNHLNPHIK KDAWSLDEEL TLLSAHRTHG NRWAELAKLL  180
PGRTDNAIKN HWNSSLKKKL DFYLATGHLP EESKNIHQNG FGDILSRTLS GEPLVCLNED  240
ASGEIADACN VGNENHKPEL VVRSHDYTSH YSSTAMLHNA SEHGRLLLNS VDTRMSNECS  300
SENLGIYGEV DQSLASRALY NNGASPCRTL YYEPPTSDSC SIQQSNLPST SMMHSEADMD  360
TEAPSEAFFT PPSEKGRSLF AQTPESLLRM AAKSFQNTPS IIRKRKSVQL PKENVACNAD  420
IRHNDGSKNT AELQQNNSSE NTELQRNALS SDRKMDDELS SSKSFNLSPS YRLNFERTLV  480
IKSVEKQLNF SSDLEQDCSD NDPKSGKMDQ VPPVMKYVYS RQKRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-626320022159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-626320022159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678405601
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077474.11e-180transcription factor MYB3R-3-like isoform X1
RefseqXP_011077475.11e-180transcription factor MYB3R-3-like isoform X1
RefseqXP_011077476.11e-180transcription factor MYB3R-3-like isoform X1
RefseqXP_020549498.11e-180transcription factor MYB3R-3-like isoform X1
RefseqXP_020549499.11e-180transcription factor MYB3R-3-like isoform X1
RefseqXP_020549500.11e-180transcription factor MYB3R-3-like isoform X1
RefseqXP_020549501.11e-180transcription factor MYB3R-3-like isoform X1
RefseqXP_020549502.11e-180transcription factor MYB3R-3-like isoform X1
RefseqXP_020549503.11e-180transcription factor MYB3R-3-like isoform X2
TrEMBLA0A4D9B7Q00.0A0A4D9B7Q0_SALSN; Myb proto-oncogene protein, plant
STRINGMigut.L01945.1.p1e-175(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.11e-103myb domain protein 3r-3