PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678405601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 525aa MW: 59014.8 Da PI: 7.2824 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.4 | 4.5e-20 | 99 | 145 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde++ ++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l 678405601 99 KGPWTQEEDEKIRELVTKHGPTKWSVIAKSLP-GRIGKQCRERWHNHL 145 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 151 | 194 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++W+ +E++ l+ a++ +G++ W+ a+ ++ gRt++ +k++w++ 678405601 151 KDAWSLDEELTLLSAHRTHGNR-WAELAKLLP-GRTDNAIKNHWNS 194 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.8 | 56 | 95 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.9E-6 | 59 | 103 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00298 | 60 | 93 | No hit | No description |
PROSITE profile | PS50090 | 4.704 | 63 | 93 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-11 | 69 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.449 | 94 | 149 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-18 | 98 | 147 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.75E-30 | 99 | 197 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-18 | 99 | 145 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-28 | 100 | 148 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-15 | 101 | 145 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 149 | 200 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.671 | 150 | 200 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-15 | 150 | 198 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-14 | 151 | 194 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.11E-10 | 153 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MAEVKSDDFY LERKEPAVSL SSSVSENSGL LKSPGISSPT STSPSRRRAT GPIRRAKGGW 60 TPEEVGLFDY KHAAEFFPDR SEVQCLHRWQ KVLNPELIKG PWTQEEDEKI RELVTKHGPT 120 KWSVIAKSLP GRIGKQCRER WHNHLNPHIK KDAWSLDEEL TLLSAHRTHG NRWAELAKLL 180 PGRTDNAIKN HWNSSLKKKL DFYLATGHLP EESKNIHQNG FGDILSRTLS GEPLVCLNED 240 ASGEIADACN VGNENHKPEL VVRSHDYTSH YSSTAMLHNA SEHGRLLLNS VDTRMSNECS 300 SENLGIYGEV DQSLASRALY NNGASPCRTL YYEPPTSDSC SIQQSNLPST SMMHSEADMD 360 TEAPSEAFFT PPSEKGRSLF AQTPESLLRM AAKSFQNTPS IIRKRKSVQL PKENVACNAD 420 IRHNDGSKNT AELQQNNSSE NTELQRNALS SDRKMDDELS SSKSFNLSPS YRLNFERTLV 480 IKSVEKQLNF SSDLEQDCSD NDPKSGKMDQ VPPVMKYVYS RQKRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 7e-62 | 63 | 200 | 22 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-62 | 63 | 200 | 22 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678405601 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077474.1 | 1e-180 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_011077475.1 | 1e-180 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_011077476.1 | 1e-180 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_020549498.1 | 1e-180 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_020549499.1 | 1e-180 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_020549500.1 | 1e-180 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_020549501.1 | 1e-180 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_020549502.1 | 1e-180 | transcription factor MYB3R-3-like isoform X1 | ||||
Refseq | XP_020549503.1 | 1e-180 | transcription factor MYB3R-3-like isoform X2 | ||||
TrEMBL | A0A4D9B7Q0 | 0.0 | A0A4D9B7Q0_SALSN; Myb proto-oncogene protein, plant | ||||
STRING | Migut.L01945.1.p | 1e-175 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5461 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09370.1 | 1e-103 | myb domain protein 3r-3 |