PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678404661
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 301aa    MW: 33980.1 Da    PI: 6.6441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678404661genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-192978255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr++  +g+WvAeIr+p +   r+r +lg+f taeeAa a+++a+++l+g
  678404661 29 EYRGVRQRT-WGKWVAEIREPQK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
               69****999.**********954...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.05E-312888No hitNo description
SMARTSM003802.5E-352992IPR001471AP2/ERF domain
PROSITE profilePS5103222.512986IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-212987IPR016177DNA-binding domain
PfamPF008472.3E-132978IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-302987IPR001471AP2/ERF domain
PRINTSPR003672.4E-103041IPR001471AP2/ERF domain
PRINTSPR003672.4E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDNGRKLPFK PWKKGPARGK GGPQNAMCEY RGVRQRTWGK WVAEIREPQK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPE AYLNLPHLRA NFNPLNKSQK FKWFPAKDIN DFPSTGLLNL  120
NAQPSVHVIH QRLQELKKTG VIGQNSSTWS LSNKPKEVLH DTIEHPQTES YNEQNKDAET  180
SSGNKEIASK EKPQIDLNEF LQQIGVLKRE GQLPASEIPK ILENTKSSTK DSVEELGNVI  240
EKDINWETLS ATVGGSIMSL GAEESSFQSH DGSGELVFPS SIWDFHENQD IFKGFDLPYI  300
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-183091667ATERF1
3gcc_A9e-183091667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678404661
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075213.11e-131dehydration-responsive element-binding protein 2F
SwissprotQ9SVX54e-83DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A2G9HGL61e-126A0A2G9HGL6_9LAMI; Uncharacterized protein
STRINGMigut.J01780.1.p1e-123(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-73ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]