PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678404142
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 363aa    MW: 40411.4 Da    PI: 8.2221
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678404142genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73e-14204248347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + k++G+g+W+ I+r m  +Rt+ q+ s+ qky
        678404142 204 PWSEEEHRLFLMGLKKYGKGDWRNISRNMVITRTPTQVASHAQKY 248
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046696.3E-8542IPR021148Polysaccharide biosynthesis domain
PROSITE profilePS512937.42280135IPR017884SANT domain
SMARTSM007171.7E-681133IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-1083136IPR009057Homeodomain-like
CDDcd001673.55E-685130No hitNo description
Gene3DG3DSA:1.10.10.601.3E-11195254IPR009057Homeodomain-like
PROSITE profilePS5129420.978197253IPR017930Myb domain
SuperFamilySSF466893.81E-16199252IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17200252IPR006447Myb domain, plants
SMARTSM007172.3E-12201251IPR001005SANT/Myb domain
PfamPF002491.9E-12204248IPR001005SANT/Myb domain
CDDcd001672.14E-11204249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSASEVRYTA EVLRRRPPPC NLLVFGMTHE MFLWSSLNFG GRRGTRQSKS TFSFFFVMSW  60
EMEVLSPTSC FATWVAGDAH RSTLWTAAEN KVFENALAVF DESTPDRWQK VAAMVPGKTV  120
GDVIRRYKEL EYDVSSIEAG LVPLPGYTST SSSSSTTATT TPFMLEWGGA TVGAADSTGC  180
KPSSAVRRST GSRSSDHERK KGIPWSEEEH RLFLMGLKKY GKGDWRNISR NMVITRTPTQ  240
VASHAQKYFI RQLNGGKDKK RASIHDITTL NLEPEPSPPE NKNRSPVPSP EAQPDFPFFE  300
WNNTNNELLM GFGCQHPPNS DIIFSSSPME ANSSYCQQVP AQESISAAHG LQQMQSGFHY  360
PNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-15851561182RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678404142
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080854.11e-113transcription factor DIVARICATA isoform X1
RefseqXP_020550520.11e-113transcription factor DIVARICATA isoform X2
SwissprotQ8S9H71e-102DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A4D8YRZ71e-105A0A4D8YRZ7_SALSN; Uncharacterized protein
STRINGMigut.N00823.1.p1e-101(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-91Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]