PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678404065

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 350aa MW: 39928.4 Da PI: 4.9284

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678404065	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.9	5.4e-55	21	150	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeelv++yL++kv + +++l +vik+vd+yk+ePwdL++ ++ aee+ ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s k+ 678404065 21 VPPGFRFHPTDEELVDYYLRRKVGSGSIDL-DVIKDVDLYKIEPWDLQElcRIGAEEQsEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIYS-KT 118 69**************************.9***********954555554445**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 el+g++ktLvfy+grap+g k+dW+mheyrle 678404065 119 ELIGMRKTLVFYRGRAPNGLKSDWIMHEYRLE 150 9***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.42E-62	17	170	IPR003441	NAC domain
PROSITE profile	PS51005	60.143	21	170	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	22	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MEPADEDKRV LPVNMSGVSK VPPGFRFHPT DEELVDYYLR RKVGSGSIDL DVIKDVDLYK 60 IEPWDLQELC RIGAEEQSEW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKSIYSKTEL 120 IGMRKTLVFY RGRAPNGLKS DWIMHEYRLE SDENAPPQEE GWVVCRVFKK KPVAMQRSGD 180 RYSPLWYDDG AALPEMEALN QKEQQSYPFL YSHTLAYTKK EVSFHHGYFP STLDIHPPTT 240 NFVENPNLDA GCSSFFPMNI SQGSALHQGE EECEGLESLV FSENGEISDN HVTDWRVFDR 300 FVASQLSQEE TFGKNEGFQS GKKRQDTKVG DDGSASILPV NNSTENIEIT

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MEPADEDKRV LPVNMSGVSK VPPGFRFHPT DEELVDYYLR RKVGSGSIDL DVIKDVDLYK  60
IEPWDLQELC RIGAEEQSEW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKSIYSKTEL  120
IGMRKTLVFY RGRAPNGLKS DWIMHEYRLE SDENAPPQEE GWVVCRVFKK KPVAMQRSGD  180
RYSPLWYDDG AALPEMEALN QKEQQSYPFL YSHTLAYTKK EVSFHHGYFP STLDIHPPTT  240
NFVENPNLDA GCSSFFPMNI SQGSALHQGE EECEGLESLV FSENGEISDN HVTDWRVFDR  300
FVASQLSQEE TFGKNEGFQS GKKRQDTKVG DDGSASILPV NNSTENIEIT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-50	21	171	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678404065

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027103940.1	1e-126	NAC domain-containing protein 7-like
Refseq	XP_027103941.1	1e-126	NAC domain-containing protein 7-like
Refseq	XP_027103942.1	1e-126	NAC domain-containing protein 7-like
Refseq	XP_027103943.1	1e-126	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-109	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A068UAL7	1e-123	A0A068UAL7_COFCA; Uncharacterized protein
STRING	XP_006490101.1	1e-120	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-101	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]