PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678403552 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | bZIP | ||||||||
Protein Properties | Length: 194aa MW: 21052.2 Da PI: 7.3525 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 77.9 | 1.3e-24 | 99 | 161 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++eN++L++el +l +e++kl+se+ 678403552 99 ERELKRQKRKQSNRESARRSRLRKQAECEELQHRVDALTNENHTLQEELRSLWNECEKLESEN 161 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.5E-18 | 93 | 159 | No hit | No description |
Pfam | PF00170 | 9.4E-23 | 99 | 161 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.6E-22 | 99 | 163 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.128 | 101 | 164 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.88E-12 | 102 | 158 | No hit | No description |
CDD | cd14702 | 2.13E-19 | 104 | 154 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 106 | 121 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGSGKTSKPN KSSKPPLSPP EPSGTPNTPP FPDLPNSSQA SYGGGATPPR LASNAAETGS 60 ASVSVPALGM DLWNASPGSE GRKLQPTPQS SAAMNQQDER ELKRQKRKQS NRESARRSRL 120 RKQAECEELQ HRVDALTNEN HTLQEELRSL WNECEKLESE NTSLKEELTM FCSPKVASDL 180 DNSRSPSPEN GGNL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 121 | RRSRLRK |
2 | 115 | 122 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678403552 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097214.1 | 2e-46 | G-box-binding factor 1-like isoform X1 | ||||
Refseq | XP_011097215.1 | 6e-47 | G-box-binding factor 1-like isoform X2 | ||||
Swissprot | P42774 | 5e-32 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A2G9I437 | 1e-44 | A0A2G9I437_9LAMI; Uncharacterized protein | ||||
STRING | XP_008241880.1 | 6e-42 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3780 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 1e-33 | G-box binding factor 1 |