PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678403537
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 533aa    MW: 59431.4 Da    PI: 5.3419
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678403537genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS275.12.1e-841725322374
       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                v+ L++ Ae++++++ +l q +Larl+e+ ++p g+p+qR+a+yf+eAL++ la+       + + +++++ + +++++a+++f ++sPi+ fs +taNq
  678403537 172 VDELIRLAECFETNSVQLGQLILARLNERlRTPVGKPLQRAAFYFKEALQSLLAG------TTPAHRPAASPEIIQTIKAQNIFAHMSPIPMFSSFTANQ 265
                678*************************99*************************......3344445555579************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                a+lea++g  +vH+iDfdi+ G++W+++ +++a+++    ++pp +Ri +v+ +e   + e + ++e+L++fA+el+v+f+ +++  +++e l+++++++
  678403537 266 ALLEATDGTMHVHVIDFDIGFGGHWASFVKEIAEKAeshkSPPPVFRISAVVTEE--YEMESNLVRENLTQFARELNVRFDVDFISIRSFEYLSFKAIKF 363
                **********************************9988777899*********66..99999************************************** PP

       GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpres....eerikvErel 289
                 +gE++aV l+  ++r         s    +L+ +++lsP vvv+v+ e +    n++s+ + +++ le+ys+l++s+ea + +      ++++ +E  +
  678403537 364 IEGEKVAVLLSPFIFREI------GS---GFLNDLRRLSPLVVVHVDVEGQIgysNTSSYRQTVINGLEFYSTLLESIEAAANSMGtngwDWMRRIETYV 454
                ************999886......44...8******************9554337999********************87743322346899******** PP

       GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                l ++i+++v + g++ ++         e+l +aG++p+ ls++a  qa++llrkv+ +g++  +++++++l+W++rp+ s+SaWr
  678403537 455 LYPKITEAVEAVGRRGTQA-------TEALVAAGLRPIGLSQFADFQAEYLLRKVQIRGFHTVKRQAEMLLCWHERPVASMSAWR 532
                *************984444.......469*******************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.894145512IPR005202Transcription factor GRAS
PfamPF035147.4E-82172532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MKVSISTTYA KTAFSSSSSS PVTAATQPPQ PGTCFLYEPR SVLDLRRSPS PVASHPGDLF  60
QLENHHVLIN PQLEDWDSWM RDLGVNDNDS PVSKSLPLEN QNLQPVPQNH YLNLPEFAAP  120
SGPYYPAEFP AVDFGLISDF PVYGSVPAGQ NSIEGFPAEL SGGNFNVGLE YVDELIRLAE  180
CFETNSVQLG QLILARLNER LRTPVGKPLQ RAAFYFKEAL QSLLAGTTPA HRPAASPEII  240
QTIKAQNIFA HMSPIPMFSS FTANQALLEA TDGTMHVHVI DFDIGFGGHW ASFVKEIAEK  300
AESHKSPPPV FRISAVVTEE YEMESNLVRE NLTQFARELN VRFDVDFISI RSFEYLSFKA  360
IKFIEGEKVA VLLSPFIFRE IGSGFLNDLR RLSPLVVVHV DVEGQIGYSN TSSYRQTVIN  420
GLEFYSTLLE SIEAAANSMG TNGWDWMRRI ETYVLYPKIT EAVEAVGRRG TQATEALVAA  480
GLRPIGLSQF ADFQAEYLLR KVQIRGFHTV KRQAEMLLCW HERPVASMSA WRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2020353234375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678403537
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847887.10.0PREDICTED: scarecrow-like protein 15
TrEMBLA0A2G9I4530.0A0A2G9I453_9LAMI; Uncharacterized protein
STRINGMigut.L00296.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-129GRAS family protein