PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678403479 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NAC | ||||||||
Protein Properties | Length: 396aa MW: 44283.6 Da PI: 5.9265 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.5 | 8.9e-52 | 28 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 l+pGfrFhPtdeelv +yL++k+ +k++++ ++++e+d+yk+ePw+L +++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v + +++ 678403479 28 LAPGFRFHPTDEELVRYYLRRKACAKPFRF-QAVAEIDVYKSEPWELAdySSLKSRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRTVRH-RNQ 125 579*************************99.88**************84347777888**************************************.899 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g+kktLvf++grap+g++t+Wvmheyrl 678403479 126 NIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 155 9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-61 | 25 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.334 | 28 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-28 | 30 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MGQEAVVVAG ANMRLKSASF GASPPTSLAP GFRFHPTDEE LVRYYLRRKA CAKPFRFQAV 60 AEIDVYKSEP WELADYSSLK SRDLEWYFFS PVDRKYGNGS RLNRATGKGY WKATGKDRTV 120 RHRNQNIGMK KTLVFHSGRA PDGKRTNWVM HEYRLCDSEL ERAGVAQDAF VLCRIFQKSG 180 LGPPNGDRYA PFVEEEWDDD EALMVPNGDV EDEMMANGDD SPALELDDQA LTKAPPATSQ 240 TLPLMCKRER SEDCPESPSV GQTKRSRQEN PSSGQGNGSE DSTTSQQEHP TTMMTTTKLS 300 STLLEFPLLD AKESHPSAHH FTFDSSNLEK SVPPGFLKFI SNLENEILNV SMERETLKIE 360 VMRAQAMINV LQSRIDLLVK DSDALRPGGA SFRQGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-53 | 27 | 178 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-53 | 27 | 178 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-53 | 27 | 178 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-53 | 27 | 178 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-53 | 27 | 178 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-53 | 27 | 178 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678403479 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019234549.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like | ||||
TrEMBL | A0A2U5FKN3 | 0.0 | A0A2U5FKN3_SALMI; NAC domain containing protein 2 | ||||
STRING | XP_009619467.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3140 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 1e-100 | NAC domain containing protein 52 |