PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678403179
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 218aa    MW: 24050 Da    PI: 5.907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678403179genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.6e-2156106155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+G+r+++ +g+W+AeIrdp   gk  r++lg+++taeeAa+a+++a++k++g
  678403179  56 SIYRGIRRRP-WGKWAAEIRDP---GKGIRVWLGTYDTAEEAARAYDRAARKIRG 106
                57********.**********8...545*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.19E-2456116No hitNo description
PfamPF008473.8E-1456106IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2456115IPR016177DNA-binding domain
SMARTSM003802.3E-4057120IPR001471AP2/ERF domain
PROSITE profilePS5103224.7957114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-3357115IPR001471AP2/ERF domain
PRINTSPR003678.9E-125869IPR001471AP2/ERF domain
PRINTSPR003678.9E-128096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MCGGAILAGL IPGRRVSPSD LTASDFWPEV SNPPKRASPS STGDEFHAPL KKPRKSIYRG  60
IRRRPWGKWA AEIRDPGKGI RVWLGTYDTA EEAARAYDRA ARKIRGKKAK LNFPNDNDDV  120
LIAEKPIRSA VKDMKSEQID FAAEGIAVGG SGGYAEKPLI EFENESTAVE DEVQKLSNEL  180
MAYENYMSFY HIPYDGVSGV APSSQPPATT ELWTFDDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-22581161574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15064KKPRKSIYRGIRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678403179
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079624.17e-74ethylene-responsive transcription factor ERF071
TrEMBLS8E4861e-68S8E486_9LAMI; Ethylene response factor 2 (Fragment)
STRINGMigut.D00130.1.p9e-63(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-28ERF family protein