PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678402871
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family TCP
Protein Properties Length: 248aa    MW: 27763 Da    PI: 9.1139
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678402871genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.81.2e-3143124283
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 
                 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LGf ++sk ++WLl++ak++i+el+ +++++  ++e+++ ++ + 
  678402871  43 FGGKDRHSKVFTVRGLRDRRVRLSVQTAIQLYDLQDRLGFNQPSKVVDWLLNAAKHEIDELPPLPFPQGGFFEQQQLVNHEM 124
                689*************************************************************888886665555555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.38445103IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-2945121IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MIEEGDARRR EVKPAVSSTT TAATTTSWSK LKDPRIVRVS RAFGGKDRHS KVFTVRGLRD  60
RRVRLSVQTA IQLYDLQDRL GFNQPSKVVD WLLNAAKHEI DELPPLPFPQ GGFFEQQQLV  120
NHEMMGGGAN HSDNLASFQS SVSGVSINPF MRWDPSNLTL SYPPRSFELG SGNEELHALS  180
WQNHLHSSIP SGSNQITTAL PYFQFDSKHF NFQGDSEMGA ASSPTVRPFN FNMTANLLPC  240
QRNNRSSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2150104155Putative transcription factor PCF6
5zkt_B9e-2150104155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678402871
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338357.11e-55PREDICTED: transcription factor TCP17
TrEMBLA0A2G9GAH01e-65A0A2G9GAH0_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000034534e-55(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-39plastid transcription factor 1