PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678402298
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRF
Protein Properties Length: 505aa    MW: 53835.9 Da    PI: 7.6856
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678402298genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-24184228145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  678402298 184 DPEPGRCRRTDGKKWRCSRDAVTDQKYCERHMNRGRHRSRKPVEG 228
                79****************************************985 PP
2QLQ54.53.5e-19106141237
        QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                +FT++Q+++L++Q+l+yKy+ +n+P+P+ Ll +++k
  678402298 106 PFTPSQWMELEHQALIYKYITSNVPIPSCLLNPVRK 141
                8******************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-9105141IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.6E-14106139IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.71106141IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.432184228IPR014977WRC domain
PfamPF088791.4E-20185227IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDLGALDLDS LVCCSSSVTL PSNNGGFSFE IDRQKGFGSG FLKQERGVNE RTHCSNLSEG  60
QQQMLSFSLP ASSQAAALPY FHQTSSGFNR GTGLNSVGAF PGMRIPFTPS QWMELEHQAL  120
IYKYITSNVP IPSCLLNPVR KPLESAGFST FSGLRSNPSD LDAIPGLFIV GWGAFHLGGF  180
SSSDPEPGRC RRTDGKKWRC SRDAVTDQKY CERHMNRGRH RSRKPVEGQS AHAGARTTAV  240
NKKPAPVSVT PTAAGPASNS LSISQQHQLS GLHQQPGSDI LAFSSFDRSF LDKENNSCSM  300
PKQQTSFQDF GLLCSNSLLN QLDRSSNLGH GSSIGGSDRL NDKDNKSGSN PLRQFMDAWS  360
ESHSDRPSPS SPSSKLQSSS QELEMCLAVG TAAAQHSQRQ STNWVPISWE PSMAGPLGEV  420
LHSTACAAGD SLDAKPLNLM ESLDNSSHLA LSPTGVLSRC TFGSLSNSSA GSSPRAESSK  480
ALDGGGVTLC NGIIPGMLST SMPNL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678402298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150366e-33AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074333.21e-164growth-regulating factor 6
TrEMBLA0A2G9HUB01e-134A0A2G9HUB0_9LAMI; Uncharacterized protein
STRINGEOY156571e-127(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.15e-47growth-regulating factor 2