PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678401920
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 472aa    MW: 51318 Da    PI: 5.9931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678401920genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.8e-154289148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed  l d+v++ G g+W+++ ++ g+ R++k+c++rw ++l
        678401920 42 KGPWTSAEDAVLMDYVRKNGEGNWNAVQKHTGLARCGKSCRLRWANHL 89
                     79******************************************9986 PP
2Myb_DNA-binding482.8e-1595138146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T eE+  ++++++++G++ W++ a++++ gRt++++k++w++
        678401920  95 KGAFTLEEERVIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 138
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8453789IPR017930Myb domain
SMARTSM007176.2E-114191IPR001005SANT/Myb domain
SuperFamilySSF466894.3E-2941136IPR009057Homeodomain-like
PfamPF002491.2E-134289IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-224397IPR009057Homeodomain-like
CDDcd001673.43E-94489No hitNo description
PROSITE profilePS5129425.37690144IPR017930Myb domain
SMARTSM007171.6E-1594142IPR001005SANT/Myb domain
PfamPF002494.6E-1495138IPR001005SANT/Myb domain
CDDcd001672.26E-1197138No hitNo description
Gene3DG3DSA:1.10.10.609.6E-2598143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MGQHSASESE DGGAFSANSP LSSNEGDSIG GKSTGNGVIL KKGPWTSAED AVLMDYVRKN  60
GEGNWNAVQK HTGLARCGKS CRLRWANHLR PNLKKGAFTL EEERVIIELH AKMGNKWARM  120
AAHLPGRTDN EIKNYWNTRI KRRQRAGLPL YPPNLYLPEQ SKSHQPLSSP SNCTEDFTSY  180
DDILLPYNDH TKSDSMSGLF SNSHQNPEYG ISPSLSIISP HSYTIAERQD EPVLHHVSSD  240
ASEPSLFVAS RATSLEVNCL SQSFSMTFPG DHSHSRKAIG FCQDTQFVSG IIPSAPKHPI  300
DAQKLELPSL QYQETSSGFW DPKSKASDTV THCPVSGALS WNCPTSGGSG LLEDLIYGAK  360
ALSNSDSHSA CWATPCNINL EDLPGNSASN GCSTGKANFD PFLTSDYLVE LDSIGRVATT  420
TMGSSLEDII VHHFRPVTVD ESWMLLDEMG NGMHTLNNSM PATVLESCGD AN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-32401435107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678401920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091869.11e-139transcription factor GAMYB
RefseqXP_011091870.11e-139transcription factor GAMYB
RefseqXP_011091873.11e-139transcription factor GAMYB
RefseqXP_020552724.11e-139transcription factor GAMYB
TrEMBLA0A059PRV51e-139A0A059PRV5_SALMI; MYB-related transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14059713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.14e-70myb domain protein 33