PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678401468
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 292aa    MW: 33145.7 Da    PI: 7.536
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678401468genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-19120172456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                + ++++eqle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k
  678401468 120 KKRLSNEQLELLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 172
                45699***********************************************9 PP
2HD-ZIP_I/II121.35e-39119210293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kk+rls+eq++lLE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k kqlE+ y+aLk++yda++++++rL++ev +Lr+ lke
    678401468 119 KKKRLSNEQLELLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKGKQLEHLYDALKQEYDAVSRDKKRLQQEVLALRALLKE 210
                  9**************************************************************************************88875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-19109175IPR009057Homeodomain-like
PROSITE profilePS5007116.876114174IPR001356Homeobox domain
SMARTSM003891.6E-18116178IPR001356Homeobox domain
CDDcd000861.36E-17119175No hitNo description
PfamPF000467.3E-17120172IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-21121181IPR009057Homeodomain-like
PRINTSPR000319.9E-6145154IPR000047Helix-turn-helix motif
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
PRINTSPR000319.9E-6154170IPR000047Helix-turn-helix motif
PfamPF021836.4E-7174208IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEWRRVFNNT LSFPRGSVRS IYELHPQFET RALCKKGVLF CLSVSFSLHV LMDWSGGLRV  60
PFIPRQESSV SFLYNCNYDQ FPGNALLEMQ QAAAHQGGLP GMMEKGGGGV GFSYGQDLKK  120
KRLSNEQLEL LENSFQEEIK LDPDRKMKLA KELGLQPRQI AVWFQNRRAR WKGKQLEHLY  180
DALKQEYDAV SRDKKRLQQE VLALRALLKE HVTKMQASAG HTDQVSGEET VESTSIPSSH  240
KLIVGDSQIR ECSSFELNVD DYSNNMIMPP AFWPPPQLPS CASEATTVNG DY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166174RRARWKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678401468
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094442.14e-93putative homeobox-leucine zipper protein ATHB-51
TrEMBLS8D9W81e-107S8D9W8_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.J00491.1.p7e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-42homeobox 51