PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678401190
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 736aa    MW: 82012.1 Da    PI: 7.577
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678401190genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-23147248199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++         ++ +   ++ +d +g sW++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   +++++ l+
  678401190 147 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--NVIAKDIHGDSWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RSENGDLC 242
                89****************************998666666..699**********************************************..4478889* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r+
  678401190 243 VGIRRA 248
                ***996 PP
2Auxin_resp109.14.6e-36314396283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a  a+++ +Fe+vY+Pra+t+eF++k+++v++a+++++++GmRfkmafe++dss++++ +Gtv++v+ +dp +WpnS+Wr+L+
   678401190 314 AFMAANGHPFEIVYYPRAGTPEFCIKASSVRDAMRTQWCPGMRFKMAFENDDSSRISWfMGTVASVQFSDPKNWPNSPWRLLQ 396
                 567899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-37137250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-29141251IPR015300DNA-binding pseudobarrel domain
CDDcd100173.05E-21146247No hitNo description
PROSITE profilePS5086313.056147249IPR003340B3 DNA binding domain
PfamPF023623.3E-21147248IPR003340B3 DNA binding domain
SMARTSM010196.5E-21147249IPR003340B3 DNA binding domain
PfamPF065078.6E-31314396IPR010525Auxin response factor
PROSITE profilePS5174516.97618698IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MERKVSEIMV EPKVKKQKKK KKKKRLEQRE VKGEMKTLTD KSVDPELWHA CAGGTVEIPE  60
ANTRVFYFPQ GHAEHAFASV DFGVLPRIPP MIPCRVAYVK FLADPETDEV YARIGLIPLR  120
NNEVVGFDDE GVAGRKMSDS SEKPTSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYTA  180
DPPVQNVIAK DIHGDSWKFR HIYRGTPRRH LLTTGWSTFV NHKKLVAGDS IVFLRSENGD  240
LCVGIRRAKR ECAGGGPLGG YGTSSLWNYD TTGNSRGGFP GIFGDESKLT PRNVCSGKMR  300
ERGRVRPETV LEAAFMAANG HPFEIVYYPR AGTPEFCIKA SSVRDAMRTQ WCPGMRFKMA  360
FENDDSSRIS WFMGTVASVQ FSDPKNWPNS PWRLLQVIWD EPDLLQNVKC VSPWLVEMVS  420
SIPLLSIPPL SSPRKKLRFP HPMDFTLDGR FPVPSFLGNT LRPSSSIYCL SDNVAAGIQG  480
ARQSKHGVPF SDLRISSEMQ MELLPPRHDI HRRILKSKAS CISDEGEDED ISCLLSMGHH  540
PDQKPEKKEG GRKTPQFVLF GQPILTEQQM SHDHQQGSES FSPSTLDRTS SSGEKWRTEL  600
SAPATMEHEK QEHEATERGV CKVFMGAQDV GRTLALSDLG SYDELYEKLE HMLEIEKTDI  660
IGHLVYHDTS GGAKQVGEEP LSEFIMSARS LVVLSNTSAA ASGAERKFIT DFATIERRLL  720
DCSSSSTQAG PFTIAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-792842130392Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11422KKQKKKKKK
21824KKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap678401190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089918.10.0auxin response factor 18-like
RefseqXP_020552218.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A191T8S30.0A0A191T8S3_SALMI; Auxin response factor
STRINGXP_009602946.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]