PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678400268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | SBP | ||||||||
Protein Properties | Length: 313aa MW: 35405.6 Da PI: 8.7024 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 72.2 | 9.2e-23 | 25 | 73 | 2 | 50 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 C v+gCeadls +++yhrrhkvCe+hsk+++v+++g++qrfCqqCsr+ 678400268 25 CLVDGCEADLSLCRDYHRRHKVCEIHSKTAKVTIRGQHQRFCQQCSRYI 73 ***********************************************95 PP | |||||||
2 | SBP | 44.6 | 3.7e-14 | 98 | 128 | 48 | 78 |
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 fh+l efD++krsCr+rL++hn+rrrk+q+ 678400268 98 MFHSLGEFDDGKRSCRKRLDGHNRRRRKPQP 128 6***************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-25 | 18 | 113 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.897 | 22 | 126 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-21 | 23 | 74 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-16 | 25 | 72 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-11 | 98 | 131 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-7 | 98 | 125 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MDSSSSSGSS KRAKASSKCS QVAHCLVDGC EADLSLCRDY HRRHKVCEIH SKTAKVTIRG 60 QHQRFCQQCS RYITTKFVDP PPLDMQCFLV IRQFHDAMFH SLGEFDDGKR SCRKRLDGHN 120 RRRRKPQPET LSQNSSFLFP SQSSLSGTTI ISFGSPPVLP ASVVPSLWPG IVKSENDMEL 180 YRYNQHHQVC YNEKPELFLN FSSHSFKEVY HQPHFNGTSV TDPKVFSEGL NHRVVSSDRA 240 LSLLSLAPEA TEEFSLNHSA RHESSSLTDP RFSTVDQDSK PLASSSQYNN DLFHHGEGSS 300 SGRSHKKMPF LWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-21 | 25 | 125 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 125 | KRSCRKRLDGHNRRRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678400268 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022891276.1 | 1e-77 | squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_022891277.1 | 1e-77 | squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_022891278.1 | 1e-77 | squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A2Z7ARB5 | 2e-81 | A0A2Z7ARB5_9LAMI; Squamosa promoter-binding-like protein 16-like | ||||
STRING | PGSC0003DMT400056374 | 3e-72 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4920 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 4e-36 | SBP family protein |