PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678399982
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family TCP
Protein Properties Length: 453aa    MW: 48279.4 Da    PI: 6.5916
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678399982genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.84.6e-39782372135
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg.......... 88 
                 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a  +i el+  +s+ ++     ++e++ss+++   s+          
  678399982  78 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAASSISELPPITSPFPETPnqlSDEKRSSTGG---SDqlvfdsadae 174
                689************************************************************9555542222212222222222...114557777788 PP

        TCP  89 ...............kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                                a ks+a+s+ s++s+ s l+l++ esr kar+ra+er +ek + k++
  678399982 175 mdggcgggdpsfgqqFATKSSACSSASEASKGSGLSLSRsESRIKARERAKERVAEKEKEKEN 237
                899999999999997667777799999*****************************9998855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-4079234IPR005333Transcription factor, TCP
PROSITE profilePS5136931.81780138IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.68214233IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDVDEIRCKF RRGNNGDGRL ESGSEKMEEQ FQDDEEEGES ERGSGAKIGG GGGVDITAAV  60
GRFYGWPSSR IVRVSRASGG KDRHSKVLTS KGLRDRRVRL SVNTAIQFYD LQDRLGYDQP  120
SKAVEWLLKA AASSISELPP ITSPFPETPN QLSDEKRSST GGSDQLVFDS ADAEMDGGCG  180
GGDPSFGQQF ATKSSACSSA SEASKGSGLS LSRSESRIKA RERAKERVAE KEKEKENASM  240
NNNNPISQTT SFTELLNGGG GAMHNNGSSP SNSSVLENPS SGATGGGTGT DSSFFLKSSR  300
QWDYLCSGML TPTPSGRGGE MQSHFNSPMF GLAAGDHQSE LQQFSFVPDH LVQVVNGSNI  360
NANHHNGSSN EYNNLSFSIS SSANSSGLAG FNRGTLQSNS SSPSLMPHMQ RFSDGSPASF  420
FSGVDNHHQF LARYDAGNNY GSRQSAHRGK GKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2385139155Putative transcription factor PCF6
5zkt_B2e-2385139155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678399982
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096599.10.0transcription factor TCP2-like
RefseqXP_011096600.10.0transcription factor TCP2-like
RefseqXP_020554008.10.0transcription factor TCP2-like
TrEMBLA0A022QZI81e-167A0A022QZI8_ERYGU; Uncharacterized protein
STRINGMigut.M00891.1.p1e-173(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.22e-38TCP family protein