PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678399881 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 183aa MW: 21125.3 Da PI: 8.9005 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.4 | 6.6e-20 | 30 | 82 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++eqle Le+ F+++ +++ +++ +LAk+lg++ rq+ +WFqNrRa++k 678399881 30 KKRLSNEQLELLENSFQEEVKLDPDRKLKLAKELGMQPRQIAIWFQNRRARWK 82 5569************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.4 | 9e-39 | 29 | 120 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kk+rls+eq++lLE+sF+ee kL+p+rK +la+eLg+qprq+a+WFqnrRAR+k+kqlE+ y+aLk++yda+ +++++L++ev +Lr+ lke 678399881 29 KKKRLSNEQLELLENSFQEEVKLDPDRKLKLAKELGMQPRQIAIWFQNRRARWKAKQLERLYDALKQEYDAVLRDKRKLHQEVLALRAILKE 120 9**************************************************************************************88875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-19 | 21 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.779 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-18 | 27 | 88 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-17 | 29 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.62E-17 | 29 | 85 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-20 | 31 | 91 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 55 | 64 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 64 | 80 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-7 | 84 | 118 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MDQLAAAQQG MLGLDKIGGM NLNYGQDPKK KRLSNEQLEL LENSFQEEVK LDPDRKLKLA 60 KELGMQPRQI AIWFQNRRAR WKAKQLERLY DALKQEYDAV LRDKRKLHQE VLALRAILKE 120 QLVKKTVNTT EKLIAGDQMP LCDAYELNVD GYNHDSSAVM PPPYWQQPPQ LPSGAREVVD 180 AHY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 84 | RRARWKAKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678399881 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101501.1 | 7e-65 | putative homeobox-leucine zipper protein ATHB-51 isoform X1 | ||||
Refseq | XP_020547010.1 | 6e-65 | putative homeobox-leucine zipper protein ATHB-51 isoform X2 | ||||
Swissprot | Q9LZR0 | 2e-42 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | S8D9W8 | 4e-64 | S8D9W8_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.J00491.1.p | 4e-61 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 5e-36 | homeobox 51 |
Publications ? help Back to Top | |||
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