PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678399847
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 265aa    MW: 28707.1 Da    PI: 9.0622
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678399847genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.8e-101156447
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     WT + d+++ +a   +G +   +W++Ia+++  g++++++k+++  +
        678399847 11 WTWDQDKQFERALITYGDHcpnRWEKIAAEVA-GKSAEDVKHHYELL 56
                     *****************99*************.***********765 PP

2Myb_DNA-binding45.31.9e-14115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++Iar +  +Rt+ q+ s+ qky
        678399847 115 AWTEDEHRLFLLGLEKYGKGDWRSIARNFVVTRTPTQVASHAQKY 159
                      6*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.455661IPR017884SANT domain
SMARTSM007171.1E-6759IPR001005SANT/Myb domain
SuperFamilySSF466891.46E-111165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-41161IPR009057Homeodomain-like
PfamPF002491.8E-81154IPR001005SANT/Myb domain
CDDcd001673.79E-101156No hitNo description
PROSITE profilePS5129418.147107164IPR017930Myb domain
SuperFamilySSF466897.59E-17110165IPR009057Homeodomain-like
SMARTSM007171.9E-11112162IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.2E-18112162IPR006447Myb domain, plants
CDDcd001673.06E-11115160No hitNo description
Gene3DG3DSA:1.10.10.602.0E-11115158IPR009057Homeodomain-like
PfamPF002492.5E-12115159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MPAQESSSLI WTWDQDKQFE RALITYGDHC PNRWEKIAAE VAGKSAEDVK HHYELLREDV  60
SRIESGFVQL PCYSSGSDGS TSHEGKRGGN VGGGGETNTG GKCSKADQER RKGIAWTEDE  120
HRLFLLGLEK YGKGDWRSIA RNFVVTRTPT QVASHAQKYF IRLNSMNKDR RRSSIHDITN  180
ANTADVVVPQ PPITGQANGT AVGKPKHPQP AAIGGPVYGA PTIGQPIGVS AVGTPVNLPP  240
PTHLAYGVVP GAPMTYPVPH AQPQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-14191190RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678399847
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070471.11e-131transcription factor SRM1
RefseqXP_011070472.11e-131transcription factor SRM1
RefseqXP_020547442.11e-131transcription factor SRM1
RefseqXP_020547443.11e-131transcription factor SRM1
SwissprotQ9FNN61e-99SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2G9HW371e-125A0A2G9HW37_9LAMI; Zuotin
STRINGXP_008360003.11e-120(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-95MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]