PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678399758
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 372aa    MW: 40997.6 Da    PI: 8.2485
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678399758genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31016.9e-3264168199
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
                f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l++
  678399758  64 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGvGElGKDRLFI 163
                89***************************966778999*************************************************6669999999999 PP

                EEE-S CS
         B3  95 kvfrk 99 
                 ++r+
  678399758 164 DWRRR 168
                99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-4255170IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-2962167IPR015300DNA-binding pseudobarrel domain
CDDcd100173.01E-2662151No hitNo description
SMARTSM010192.0E-2264169IPR003340B3 DNA binding domain
PROSITE profilePS5086314.66364169IPR003340B3 DNA binding domain
PfamPF023622.2E-2964168IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MNFMSGRPGF YQEMTAPRLS SSASAFQPLE SPPIHVIDDD SETNRRGGEG GSSSNSSVAR  60
EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSSTNEKG LLLNFEDRNG KPWRFRYSYW  120
NSSQSYVMTK GWSRFVKEKR LDAGDIVSFQ RGVGELGKDR LFIDWRRRPD APEIQPPFYS  180
FSISNHHQFP GLQRPMHPWS PLFLPSNTNQ NHVLSASPNH HHHHRAAAAA YGGYGYNSVM  240
SGNPCSVGSI FYLRSGGGGY AAGVSPQGQR GVEPMVFESV PVVQGKAAAK RLRLFGVNVD  300
CSISESDDYD MMSSSTSPTT ATLPLIHQFP ATNLDSSPSS SSAPSDLQLR SGYGHSRDDD  360
KGKGSMSLDL DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-66601694114B3 domain-containing transcription factor NGA1
5os9_B5e-66601694114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678399758
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547752.11e-131B3 domain-containing transcription factor NGA1-like
SwissprotQ8LMR95e-81Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2G9G2U21e-130A0A2G9G2U2_9LAMI; Uncharacterized protein
STRINGGorai.008G261100.11e-113(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-72B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]