PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678399706
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRF
Protein Properties Length: 380aa    MW: 42725.8 Da    PI: 8.9723
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678399706genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.46.2e-24199242144
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                d+ep+rC+RtDGKkWRCsr+v +++k+CErH h++r rsrk++e
  678399706 199 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKNRPRSRKHVE 242
                79****************************************98 PP
2QLQ43.41e-15118150234
        QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 
                +FT++Qlq++++Q  + Ky+++++PvPpeLl++
  678399706 118 SFTPSQLQEFERQSVIHKYMMSSMPVPPELLLH 150
                8*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.9E-7117153IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.277118153IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-10118149IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.049199243IPR014977WRC domain
PfamPF088793.3E-19200242IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MYGMIWGSIS FLYSLSEFHT LPLQCAVQLH FWHRSFRELR PSCNSTTAMS DVNGVNSPSF  60
TPPGFRMLQS DFFHRGGNEG RVMYDSSAQQ HQQMPPRFNC LFDSNGIRAS GTAYGKASFT  120
PSQLQEFERQ SVIHKYMMSS MPVPPELLLH APRIPPQSNS TYRSLVLSSS HSECMVSIYE  180
WGFVFATGVD VGFSSVRSDP EPWRCKRTDG KKWRCSRDVA PDQKYCERHA HKNRPRSRKH  240
VEVTPKTSHQ VSGISPSRSQ TKAEPTDKQR PTPEESSSMG QKGSSERTKS KCFFSWATAT  300
ETQTSKFLPC SSLTLSTPGE SIFHRENPCY VQNQDQTAEL DFENWVNLAP GGPLGEALGL  360
VNGFRHGWSN SNSNSAAVKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678399706
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125171820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.19e-38growth-regulating factor 8