PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678398875
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 215aa    MW: 24030.2 Da    PI: 9.0326
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678398875genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Edell++++ ++G g+W++ +r  g+ R++k+c++rw +yl
        678398875 14 KGAWTKREDELLIEYISKHGEGSWRSLPRAAGLMRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding59.29e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEde++++ + +lG++ W++Ia++++ gRt++++k++w+++
        678398875  67 RGNFTQEEDEIIINFHSLLGNR-WSLIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.351961IPR017930Myb domain
SuperFamilySSF466892.37E-3013108IPR009057Homeodomain-like
SMARTSM007171.3E-121363IPR001005SANT/Myb domain
PfamPF002494.5E-151461IPR001005SANT/Myb domain
CDDcd001671.56E-111661No hitNo description
PROSITE profilePS5129428.38562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2865117IPR009057Homeodomain-like
SMARTSM007177.1E-1866114IPR001005SANT/Myb domain
PfamPF002499.4E-1767111IPR001005SANT/Myb domain
CDDcd001677.33E-1469112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MARSPCCEKA HTNKGAWTKR EDELLIEYIS KHGEGSWRSL PRAAGLMRCG KSCRLRWINY  60
LRPDLKRGNF TQEEDEIIIN FHSLLGNRWS LIAARLPGRT DNEIKNYWNT HIKRKLISGG  120
IDPQTHRPLG QQKPTSPISF SMGTGDRDPA PTSGNSSSSR VRVTEEHSNG SSVVSEESHP  180
HIDLELSIRP PQIEMGQLVD GPVVPLCTSV GIKTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678398875
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097098.17e-89myb-related protein 308
SwissprotP813934e-82MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A3S3MH654e-84A0A3S3MH65_9MAGN; Myb-related protein 308
STRINGGorai.002G196700.14e-84(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.17e-84myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]