PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678398638 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 24839.2 Da PI: 7.3375 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.3e-18 | 45 | 93 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g 678398638 45 FLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAQEAALAYDKAALSIKG 93 56******.**********933...5***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.0E-29 | 44 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.758 | 44 | 101 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.23E-27 | 44 | 100 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-27 | 45 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 45 | 101 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.4E-8 | 45 | 56 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-11 | 47 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-8 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010102 | Biological Process | lateral root morphogenesis | ||||
GO:0010432 | Biological Process | bract development | ||||
GO:0010451 | Biological Process | floral meristem growth | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MPSSKPLAPL ELGHLEKGAC TLLQSAAAVG FRGKKKKKLP DPGRFLGVRR RPWGRYAAEI 60 RDPNTKERHW LGTFDTAQEA ALAYDKAALS IKGLQATTNF IYTNANPEDE EDKGLFNDIL 120 KPEPNSGYLD CIVPSNYLYP PHARRLNTPD RKLASCVGEL DDKETRIFST PLEEQRVQLG 180 QYCELSAVVY NHGVVGESKI EGCDQMNGKV FPCGGDDAWK NCVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-19 | 41 | 100 | 11 | 71 | Ethylene-responsive transcription factor ERF096 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00520 | DAP | Transfer from AT5G18560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678398638 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008438827.1 | 8e-38 | PREDICTED: ethylene-responsive transcription factor ERF086 | ||||
Refseq | XP_021904878.1 | 8e-38 | ethylene-responsive transcription factor ERF086 | ||||
STRING | evm.model.supercontig_16.148 | 3e-37 | (Carica papaya) | ||||
STRING | XP_008438827.1 | 3e-37 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9307 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 2e-38 | ERF family protein |