PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678398143
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 361aa    MW: 40136.3 Da    PI: 8.286
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678398143genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.5e-53151421128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelvv+yLkkk+++++l++  +i+evd+yk++Pw+Lp+k+  +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+++ ++e+
  678398143  15 LPPGFRFHPTDEELVVHYLKKKAASSPLPV-AIIAEVDLYKFDPWELPAKAIFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVMTAgGTEK 113
                79****************************.88***************7777899***************************************977788 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk Lvfy g+ p+g kt+W+mheyrl
  678398143 114 VGVKKALVFYGGKPPRGIKTNWIMHEYRL 142
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-6510176IPR003441NAC domain
PROSITE profilePS5100562.23115176IPR003441NAC domain
PfamPF023654.0E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MESTDSSGET PQPQLPPGFR FHPTDEELVV HYLKKKAASS PLPVAIIAEV DLYKFDPWEL  60
PAKAIFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVMTAGG TEKVGVKKAL  120
VFYGGKPPRG IKTNWIMHEY RLADNKSNTK PPGCDATNKK GSLRLDDWVL CRIYKKNSLQ  180
RPLDQDRDAD INQVMGMGTV HPTIPMTTMG VGLQLHKGGG GALKGQNYSS LLLENQPNFY  240
HGGIEDASKV PWVGDPNILL HGKRMLSNFY WNEETAAAAA ATESPPTKRF LSDSCCEGSS  300
LGRTDDTTNS IAMVLSQLPQ TNPMQQQQQQ QQQQQQQALM GNLEDNGVFR PPPYPSMNWY  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-741217814167NO APICAL MERISTEM PROTEIN
1ut4_B1e-741217814167NO APICAL MERISTEM PROTEIN
1ut7_A1e-741217814167NO APICAL MERISTEM PROTEIN
1ut7_B1e-741217814167NO APICAL MERISTEM PROTEIN
3swm_A1e-741217817170NAC domain-containing protein 19
3swm_B1e-741217817170NAC domain-containing protein 19
3swm_C1e-741217817170NAC domain-containing protein 19
3swm_D1e-741217817170NAC domain-containing protein 19
3swp_A1e-741217817170NAC domain-containing protein 19
3swp_B1e-741217817170NAC domain-containing protein 19
3swp_C1e-741217817170NAC domain-containing protein 19
3swp_D1e-741217817170NAC domain-containing protein 19
4dul_A1e-741217814167NAC domain-containing protein 19
4dul_B1e-741217814167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678398143
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095244.11e-154NAC transcription factor 56-like
SwissprotQ9LD441e-112NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A2G9HYQ01e-153A0A2G9HYQ0_9LAMI; Uncharacterized protein
STRINGXP_009769986.11e-147(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-107NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]