PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678398020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 186aa MW: 20825.6 Da PI: 10.0353 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.9 | 1.5e-17 | 17 | 70 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++t++q+++Le+ F +++ e++ +LA++lg++ rq+ +W+qN+Ra++k+ 678398020 17 KKRLTQDQVRVLEASFIAGKKLEPERKFQLARELGVPPRQIAIWYQNKRARWKN 70 5679************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 108.3 | 5.5e-35 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++qv++LE sF + +kLeperK +lareLg+ prq+a+W+qn+RAR+k++ lE dy aL+ +++a +++++Lek+ve+Lr+elk+ 678398020 16 QKKRLTQDQVRVLEASFIAGKKLEPERKFQLARELGVPPRQIAIWYQNKRARWKNQSLELDYGALQLRLEAALADKRQLEKQVESLRAELKR 107 69***************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.24 | 11 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-14 | 13 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.21E-17 | 16 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.88E-13 | 17 | 72 | No hit | No description |
Pfam | PF00046 | 5.4E-15 | 17 | 70 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-18 | 18 | 77 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.8E-5 | 42 | 51 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.8E-5 | 51 | 67 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSLQHSQKSH HALKLQKKRL TQDQVRVLEA SFIAGKKLEP ERKFQLAREL GVPPRQIAIW 60 YQNKRARWKN QSLELDYGAL QLRLEAALAD KRQLEKQVES LRAELKRATQ DTTAFRSQFQ 120 NPVFGSSLSS GGDETTTTVC SSLNDDVGYS GNWGNGDSLK LEELYACLML GIPKGSNHAP 180 FPGGVK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678398020 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082709.1 | 7e-72 | homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A2G9HDX0 | 1e-71 | A0A2G9HDX0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M00776.1.p | 4e-63 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 5e-38 | homeobox protein 52 |