PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678397942
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family TCP
Protein Properties Length: 443aa    MW: 49084.4 Da    PI: 6.7485
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678397942genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.32e-36351421107
        TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.kaaksaakskk 99 
                a+g kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el++++  ++++c++ + + +++  + + ++++ ++k + 
  678397942  35 ATGTKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAQLPPWHPTSCSPRNVRFNEEDARMKfNEEEPQMKLET 134
                5799*************************************************************88888888555555555533333322222223333 PP

        TCP 100 sqksaasa 107
                +++s++++
  678397942 135 EHHSEHQQ 142
                33333322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3236141IPR005333Transcription factor, TCP
PROSITE profilePS5136933.0483896IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MGENNHQQIT PRSRFGLRTS CGEIVEVQGG HIVRATGTKD RHSKVCTAKG PRDRRVRLAA  60
HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK AAIDELAQLP PWHPTSCSPR NVRFNEEDAR  120
MKFNEEEPQM KLETEHHSEH QQLLGVHDSD FMINISAPAS KTPTVMLEEE HGQQDLHNQR  180
ANGSIINPTP QSTSFLPPVY IDGIADTIKP FFPAGASAAE ASSSSTKFQN FRFPDLLSRN  240
RGNFQDLRLS LQSFQDPLLF YHHPQQHLNT THHPEQACQQ GHVQTQIILS GTPLGFDVTA  300
TRDAYHQQAA EVTRLQRPLT WNSSGGDTGS GAGAAAFLFS LPQLLGHSQF LPQRGPLQSN  360
NPPLARAWMD QSDVTTGSDD PSQQHHLPET ALPIYQSSVQ GIGFASGVGG CSRFHIPERI  420
QDIEGEHDGH SQKPSFASPD TPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-204396154Putative transcription factor PCF6
5zkt_B5e-204396154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678397942
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082737.11e-169transcription factor TCP4-like
RefseqXP_011082738.11e-169transcription factor TCP4-like
TrEMBLA0A2G9HTM91e-152A0A2G9HTM9_9LAMI; Uncharacterized protein
STRINGXP_009630327.11e-118(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-77TCP family protein