PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678397573
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 290aa    MW: 31791.4 Da    PI: 6.5857
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678397573genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.18.7e-17213249135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  678397573 213 CRHCGISEkfTPMMRRGPEGPRTLCNACGLMWANKGT 249
                ******999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.0E-1072107IPR010399Tify domain
PROSITE profilePS5132014.47672107IPR010399Tify domain
PfamPF062006.1E-1275106IPR010399Tify domain
PfamPF062035.2E-16137179IPR010402CCT domain
PROSITE profilePS5101713.235137179IPR010402CCT domain
SMARTSM004016.1E-11207260IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-12210260No hitNo description
Gene3DG3DSA:3.30.50.101.5E-15212254IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.48E-15212255No hitNo description
PROSITE profilePS501148.603213263IPR000679Zinc finger, GATA-type
PfamPF003201.1E-14213249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440213240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNVIHVNEPG MSHYLEDELH HHIRGRNVND GDDGTISIGG RGAVDDAMDG DAVGELGNHS  60
DTQGSLVPHV GGGDSSDQLT LTFQGQVYVF DSVSPDKVQA VLLLLGGREV PPSIPTAPMS  120
TSSNKANRPQ KFNVPQRMAS LIRFREKRKE RNFDKKIRYT VRKEVALRMQ RNKGQFTSSK  180
PTQDEAASVD SSWESTQSWA TQVNGSQVQD AFCRHCGISE KFTPMMRRGP EGPRTLCNAC  240
GLMWANKGTL RDLSKTTHLG STPTHAKTEE DGNFEGEDMV MSAAAAHPEE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678397573
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072744.11e-131GATA transcription factor 28
SwissprotQ8H1G02e-98GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2G9I2N61e-134A0A2G9I2N6_9LAMI; Uncharacterized protein
STRINGMigut.I01184.1.p1e-125(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.27e-98ZIM-LIKE 2