PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678397481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 408aa MW: 45071.6 Da PI: 4.5388 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.6e-19 | 160 | 209 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ +++++g 678397481 160 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDEEARRIRG 209 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.854 | 160 | 217 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 160 | 218 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 160 | 217 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.0E-38 | 160 | 223 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.61E-33 | 160 | 218 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 161 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-12 | 161 | 209 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 183 | 199 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MCGGAIISDL GLPAQRSLRR LTADLLWGTD LENLDAAKNI GKRSKPVVEV DDDFEADFLG 60 FKDDSEAPFA SKNLTSKGGY SYVFFFLLSG SVFGNLVYHE CLVLSACFVG LCVGGIIPCS 120 KAYSCVLSDL ICFIPGVSGS VGCDSDEDCE KTLKRKRKNQ YRGIRQRPWG KWAAEIRDPR 180 KGVRVWLGTF NTAEEAARAY DEEARRIRGK KAKVNFPEGA VPPTSKRTAK QKVSPKESRN 240 FIQPLENETM DFMKMINNEY YEPLMFLEEK KPPNPVPPLD AAHAYFSSDQ GSNSFDCSDF 300 GWGEHCANTP EISSEICPVI EGEPTPFELD VSQAKKGKMI PRVSVTRNDN SANNISDDLA 360 AFTPQAPFLD SNWDGSIDSF LDEDTTQDGD SVDLWSFDDL LDAAGCAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 160 | 217 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678397481 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072679.1 | 1e-123 | ethylene-responsive transcription factor RAP2-12-like isoform X1 | ||||
Swissprot | Q6K7E6 | 8e-55 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A022Q440 | 1e-110 | A0A022Q440_ERYGU; Uncharacterized protein | ||||
TrEMBL | A0A2G9GX08 | 1e-110 | A0A2G9GX08_9LAMI; Uncharacterized protein | ||||
STRING | Migut.I01124.1.p | 1e-111 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.1 | 2e-50 | related to AP2 2 |