PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678397478
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 231aa    MW: 25173.8 Da    PI: 8.2232
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678397478genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1878128155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++ +g
  678397478  78 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSVKG 128
                68*****998.**********843...6**********************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-1378128IPR001471AP2/ERF domain
PROSITE profilePS5103223.07779137IPR001471AP2/ERF domain
SMARTSM003806.9E-3479143IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1979138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-3079138IPR001471AP2/ERF domain
CDDcd000183.80E-3080137No hitNo description
PRINTSPR003672.3E-108091IPR001471AP2/ERF domain
PRINTSPR003672.3E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MLTKTILGEI EKHSDIILPR GSLLFVTPFP SFSFCPKSPF LSHAASVMSS LDHTSSPASL  60
PGKRRRKSSC GGAATKHPVY RGVRMRNWGK WVSEIREPRK KSRIWLGTFP TPEMAARAHD  120
VAALSVKGAS SAALNFPQLA EVLPRPASLN PRDIQAAAAE AARLDFPVAS TDSTDSSSCP  180
CSSPELGDIV ELPRLDTCLK LVSYDWTGVD MEPPPPLPWS DAAEELMTWN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1772138773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678397478
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915419.11e-53dehydration-responsive element-binding protein 3
SwissprotQ9LYD31e-48DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A4D9AFV85e-52A0A4D9AFV8_SALSN; EREBP-like factor
STRINGXP_006426907.11e-51(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]