PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678397283

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Dof

Protein Properties

Length: 466aa MW: 50684.8 Da PI: 8.539

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678397283	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.2e-39	110	169	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e++l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ 678397283 110 PERILPCPRCNSMDTKFCYYNNYNTNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSA 169 67899*****************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	107	167	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-32	113	168	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.751	114	168	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	116	152	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MSDPRIKLFG RTIRLPERFS ADSGIDSNQN GCFSGNPQTG ELVEEQSLKS RCFEMNGHSQ 60 PLAQVDLKGN NLETPLTEDL SGPFSGNHQP SKIDEQQEVG VSQEKSFKKP ERILPCPRCN 120 SMDTKFCYYN NYNTNQPRHF CKNCQRYWTA GGTMRNVPVG AGRRKNKSAV SQFRQAIPEA 180 LQKVRVDHST GLSHPGLKAN GNGLKFISDA PLCESLVSSL SIGDKKSVSG GFSQTGEQEC 240 SVSPRSKEGR HDHPVESSIA ILKGVIGKRD LQEQVPSHPF PSQVACFPGA PWPYPCHSVG 300 WNSPASANTF AFAGFPMPSS YSTTPQFMRC SIPSCWTGPW IIPSAPMPPC SGASSPTLGK 360 HSRDDRIMKS ANFGEETLKE NTSEQILWVP KTSRIDDPAQ LSKNSILSNL GIKDDGADSI 420 GVSSSSLFKS FKGQPKNKGT QDTNSSAVLQ ANPAALSRAL SFHETS

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MSDPRIKLFG RTIRLPERFS ADSGIDSNQN GCFSGNPQTG ELVEEQSLKS RCFEMNGHSQ  60
PLAQVDLKGN NLETPLTEDL SGPFSGNHQP SKIDEQQEVG VSQEKSFKKP ERILPCPRCN  120
SMDTKFCYYN NYNTNQPRHF CKNCQRYWTA GGTMRNVPVG AGRRKNKSAV SQFRQAIPEA  180
LQKVRVDHST GLSHPGLKAN GNGLKFISDA PLCESLVSSL SIGDKKSVSG GFSQTGEQEC  240
SVSPRSKEGR HDHPVESSIA ILKGVIGKRD LQEQVPSHPF PSQVACFPGA PWPYPCHSVG  300
WNSPASANTF AFAGFPMPSS YSTTPQFMRC SIPSCWTGPW IIPSAPMPPC SGASSPTLGK  360
HSRDDRIMKS ANFGEETLKE NTSEQILWVP KTSRIDDPAQ LSKNSILSNL GIKDDGADSI  420
GVSSSSLFKS FKGQPKNKGT QDTNSSAVLQ ANPAALSRAL SFHETS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678397283

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098639.1	1e-142	cyclic dof factor 2-like
TrEMBL	A0A2G9GHS2	1e-136	A0A2G9GHS2_9LAMI; Uncharacterized protein
STRING	VIT_14s0108g00980.t01	1e-127	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-79	cycling DOF factor 2