PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678396934

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 506aa MW: 55762 Da PI: 9.5703

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678396934	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H 678396934 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	11.2	0.0012	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + 678396934 143 WKCDKCSKKYAVQSDWKAHSKIC 165 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.95E-7	65	88	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	8.1E-5	66	88	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	66	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	66	88	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	108	138	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.4E-4	131	164	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.95E-7	138	163	No hit	No description
SMART	SM00355	150	143	163	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MLSNDKIHLL HSVASIGAAT QEPRPNPNPN PNPNPLKRKR SLPGHPDPEA EVVALSPRSL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EQVKKKVYIC PEKTCVHHDP 120 SRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR 180 KDSFITHRAF CDTLAEETAR VPPANLGNQQ FPGIFRQDIG GLETGNQLNM DLEKGRIPIW 240 LDNIGAPNIS FLSQGSSLPE IFQMGSQSPW FSGGPEMTQF GGGGHMNMAA CSSIPRMLKE 300 ESVKGGNFSD TISPSLYYSS HPSETYPPPL PQMSATALLQ KASQMGSSRS SDPFFHMNSS 360 PLLSGVLLRT QGAMDAEGGL TRDFLGVEGN RRQNRQFMAE NELPRSPLST HSAQPTVNSA 420 TQPCTQSGPH RPTHSIKEKL IVSNPQMQGI TNADVGTGAG DWTWTASEAS GKGGHCTQEQ 480 STGEWAPRPR REAVGRPARR VDVGIE

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MLSNDKIHLL HSVASIGAAT QEPRPNPNPN PNPNPLKRKR SLPGHPDPEA EVVALSPRSL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EQVKKKVYIC PEKTCVHHDP  120
SRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR  180
KDSFITHRAF CDTLAEETAR VPPANLGNQQ FPGIFRQDIG GLETGNQLNM DLEKGRIPIW  240
LDNIGAPNIS FLSQGSSLPE IFQMGSQSPW FSGGPEMTQF GGGGHMNMAA CSSIPRMLKE  300
ESVKGGNFSD TISPSLYYSS HPSETYPPPL PQMSATALLQ KASQMGSSRS SDPFFHMNSS  360
PLLSGVLLRT QGAMDAEGGL TRDFLGVEGN RRQNRQFMAE NELPRSPLST HSAQPTVNSA  420
TQPCTQSGPH RPTHSIKEKL IVSNPQMQGI TNADVGTGAG DWTWTASEAS GKGGHCTQEQ  480
STGEWAPRPR REAVGRPARR VDVGIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	139	208	3	72	Zinc finger protein JACKDAW
5b3h_F	1e-34	139	208	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678396934

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089318.1	1e-161	protein indeterminate-domain 9
Swissprot	Q944L3	1e-118	IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBL	S8C619	1e-159	S8C619_9LAMI; Zinc finger family protein (Fragment)
STRING	XP_009771226.1	1e-145	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-109	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]