PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678395402
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 432aa    MW: 48599.6 Da    PI: 6.4427
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678395402genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.63.2e-129624311373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL+ cA+a+s++ l + ++l++  ++ +s +g+p+qRl ay++e+L ar   s++++ykal+++e +   s++ l+++++++e++P+lkf++++aN 
  678395402  62 LKQLLVVCAKALSENRLPEFHKLVEYARKGVSISGEPIQRLGAYMLEGLVARTEVSGTKIYKALKCNEPE---SKDLLNYMHILYEICPYLKFGYMAANG 158
                679******************************************************************9...99************************* PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                aI ea ++e+r+Hi+Df+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s+  +   le +++rLa + e++++p+ef++ v     d+++e+L v+p
  678395402 159 AIAEACKNEDRIHIVDFQIAQGTQWMTLLQALAARPGGPPRVRITGIDDPVSKhaRGSGLELLEKRLAAVSEKFKIPVEFHP-VPGFSPDVSPEMLGVRP 257
                *************************************************999888999************************.688899*********** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                gEalaVn+ lqlh+++desv+++++rd +L++++sl+Pkvv++veqe+++n+++Fl rf+eal++ysa+f+s+++ + r+ +eri+vE+++l+r+ivn++
  678395402 258 GEALAVNFPLQLHHTPDESVDVSNPRDGLLRMIRSLNPKVVTLVEQESNTNTAPFLPRFIEALDFYSAMFESIDVMMERDRKERINVEQHCLARDIVNII 357
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                aceg+er+erhe l+kWr+r+++aGF+p pl+ ++++ +  ll+ ++ + y+v e++g+++lgWk+r+Lvs+SaW
  678395402 358 ACEGKERVERHELLGKWRARFMMAGFRPFPLNCYVNSVIGDLLKCYS-EHYTVVERDGAMLLGWKNRNLVSASAW 431
                *******************************************9988.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.47836413IPR005202Transcription factor GRAS
PfamPF035141.1E-12662431IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGSDNEGEEV ASSEDPFLNE KRKSQTSGSS SRPWNQGSQW SNQMVPHETF EQELPCPSPS  60
NLKQLLVVCA KALSENRLPE FHKLVEYARK GVSISGEPIQ RLGAYMLEGL VARTEVSGTK  120
IYKALKCNEP ESKDLLNYMH ILYEICPYLK FGYMAANGAI AEACKNEDRI HIVDFQIAQG  180
TQWMTLLQAL AARPGGPPRV RITGIDDPVS KHARGSGLEL LEKRLAAVSE KFKIPVEFHP  240
VPGFSPDVSP EMLGVRPGEA LAVNFPLQLH HTPDESVDVS NPRDGLLRMI RSLNPKVVTL  300
VEQESNTNTA PFLPRFIEAL DFYSAMFESI DVMMERDRKE RINVEQHCLA RDIVNIIACE  360
GKERVERHEL LGKWRARFMM AGFRPFPLNC YVNSVIGDLL KCYSEHYTVV ERDGAMLLGW  420
KNRNLVSASA WN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-626943225378Protein SCARECROW
5b3h_D5e-626943225378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678395402
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095306.10.0scarecrow-like protein 21
RefseqXP_012827553.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_020553937.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLS8BY440.0S8BY44_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M01823.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]