PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678394860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 251aa MW: 27558.5 Da PI: 8.0092 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.8 | 1.5e-32 | 160 | 216 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekkl k+rkpylheSRh+hA++R+RgsgGrF 678394860 160 QEPVYVNAKQYHGILRRRQSRAKAELEKKL-VKARKPYLHESRHRHAMNRARGSGGRF 216 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.7E-35 | 158 | 219 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.087 | 159 | 219 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-28 | 161 | 216 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.5E-24 | 162 | 184 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 164 | 184 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.5E-24 | 193 | 216 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MQSNPKSGSQ REPKFDDAGD SSAPSAPPWW NNAVSGSLDP TLTRRNSCDT SSNEHSADGI 60 WLSEGGINEE DDDNAKESPS TTIQQDKNCE RDGQVPPTLY PRIGGTFAQG RQLIGLSVAC 120 GSNPYEPYYA GLIAPYGQPL VPHLYDMHHA RIPLPLELTQ EPVYVNAKQY HGILRRRQSR 180 AKAELEKKLV KARKPYLHES RHRHAMNRAR GSGGRFAKKS SDADAAEATT VSGSESIRTH 240 INLSEAPCPS R |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-21 | 159 | 216 | 1 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678394860 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080345.1 | 8e-88 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_011080346.1 | 8e-88 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_011080347.1 | 8e-88 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_011080348.1 | 8e-88 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_011080349.1 | 8e-88 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_011080350.1 | 8e-88 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_020550734.1 | 8e-88 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_020550735.1 | 8e-88 | nuclear transcription factor Y subunit A-1-like | ||||
TrEMBL | A0A4D8YDX9 | 6e-91 | A0A4D8YDX9_SALSN; Uncharacterized protein | ||||
STRING | Migut.N02320.1.p | 2e-86 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3111 | 22 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12840.4 | 7e-35 | nuclear factor Y, subunit A1 |