PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678394758
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 428aa    MW: 48289.9 Da    PI: 6.5709
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678394758genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS407.11.7e-124394251374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL++cA++v++g+le+a+ +L ++s+las +gd+mqR+a+yf eALa+r++++++++ykal+ ++ +  n++ee+ ++klf+e+ P++k++ +++Nq
  678394758  39 LIHLLVTCAHHVATGSLENANVVLDQISHLASAEGDTMQRIASYFSEALAERILKMWPGVYKALRLTRIP--NTAEEMLVRKLFFELLPFMKVAAVITNQ 136
                689*************************************************************999988..69999*********************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                aI+ea+ege++vH+iD++  + +Q  +L+++L +Rpegpp+lRiTgv++    +ke l +t++ L++ Ae+l++pf+f++ + ++le+l++e+L vk+gE
  678394758 137 AIMEAMEGEKMVHVIDLNPVESMQSCSLIRSLCARPEGPPHLRITGVHH----EKEVLDQTARVLTQEAEKLDIPFQFTP-IISKLENLDIEKLPVKTGE 231
                *************************************************....9**************************.7999*************** PP

       GRAS 201 alaVnlvlqlhrll..................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                ala+ +v++lh+ll                   +s + e  +d++++++ +lsPkv+v++e+++d+n++ +ler++e+l+ y+a+fd+le+ +pr seer
  678394758 232 ALAITSVMKLHELLalghattrsqrlalprnqTQSYDKETVIDSFISALSGLSPKVMVMTERDSDLNAKCLLERLSESLHLYAAMFDCLESAMPRRSEER 331
                ******************************776666666689********************************************************** PP

       GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak.lllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                 k+E+++lg+ei n++acegaer++r e+  kW +r+e+aGF++v++s++   q + lll++++ +gy++  ee+g++ l W +rpL++v aW+
  678394758 332 CKMEKMVLGEEINNIIACEGAERKHRYERTDKWCQRFESAGFTQVAVSYQSLVQGRrLLLQRFSCEGYKIVeEENGCASLHWCGRPLFFVAAWT 425
                *************************************************999887615789999*****8637799999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.64413403IPR005202Transcription factor GRAS
PfamPF035146.0E-12239425IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MLQEERSSSS VTSVFPLMSL SSSYPSLKDL KPEERGLYLI HLLVTCAHHV ATGSLENANV  60
VLDQISHLAS AEGDTMQRIA SYFSEALAER ILKMWPGVYK ALRLTRIPNT AEEMLVRKLF  120
FELLPFMKVA AVITNQAIME AMEGEKMVHV IDLNPVESMQ SCSLIRSLCA RPEGPPHLRI  180
TGVHHEKEVL DQTARVLTQE AEKLDIPFQF TPIISKLENL DIEKLPVKTG EALAITSVMK  240
LHELLALGHA TTRSQRLALP RNQTQSYDKE TVIDSFISAL SGLSPKVMVM TERDSDLNAK  300
CLLERLSESL HLYAAMFDCL ESAMPRRSEE RCKMEKMVLG EEINNIIACE GAERKHRYER  360
TDKWCQRFES AGFTQVAVSY QSLVQGRRLL LQRFSCEGYK IVEEENGCAS LHWCGRPLFF  420
VAAWTAGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-65274257379Protein SCARECROW
5b3h_A3e-65274256378Protein SCARECROW
5b3h_D3e-65274256378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678394758
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080382.10.0scarecrow-like protein 3
RefseqXP_011090154.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-169SCL3_ARATH; Scarecrow-like protein 3
TrEMBLS8E6860.0S8E686_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.D00643.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-162scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]