PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678394457
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 397aa    MW: 43346.6 Da    PI: 8.8974
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678394457genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-081652021144
                      HHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  11 llvdavkqlGgg.....tWktIartmgkgRtlkqcksrw 44 
                      +++ +  +lG +     +W++Ia+ ++ +Rt++++k++w
        678394457 165 RFILLLVRLGADdrslcRWSAIAAQLP-RRTDNDVKNYW 202
                      77888889999999999**********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.098162206IPR017877Myb-like domain
PfamPF002495.3E-6165202IPR001005SANT/Myb domain
SuperFamilySSF466891.3E-6179214IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-10181217IPR009057Homeodomain-like
CDDcd001671.08E-4182202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDLALNAGAM LIMGDVAESI LNIYKLTDRV MTSLFVTGTH VCPPQLIPSI SPPPPDWIPA  60
YKYARAVDRG ISSHRKWKTN ATAARERNLR SAEALGQKKK TTSFLVMSVS MATAVGAPFP  120
RKLAAMDQLS QAGYQKRQLQ CAGGEGHSSS SRPSRQSVLI CECGRFILLL VRLGADDRSL  180
CRWSAIAAQL PRRTDNDVKN YWTLRLKKKL TRMGIDPVTH KPKHCAAGAG TVQSKQIAEL  240
SHMAQWETTR LEAEARLVRE SKLHLRRNVT RAANLTPPLK LHLAPRCLDV LKVWEATASH  300
NGFFSPTPSS TSLESPASTL NFPATAPVAS DVVFSDARGL GNADNKAEVV HDGGAAAAGN  360
CSELDPIGDM DFSDSDYLHM LEENMDYWSS VLGELLD
Cis-element ? help Back to Top
SourceLink
PlantRegMap678394457
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547692.18e-50transcription factor MYB28-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.13e-31myb domain protein 106