PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678394014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TALE | ||||||||
Protein Properties | Length: 155aa MW: 17795.1 Da PI: 9.7581 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.2 | 3.6e-10 | 78 | 111 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps+++++ LA+++gL+ rq+ +WF N+R ++ 678394014 78 WPYPSEAQKTALAESTGLDRRQINNWFINQRKRH 111 58*****************************985 PP | |||||||
2 | ELK | 34.8 | 3.5e-12 | 32 | 52 | 2 | 22 |
ELK 2 LKhqLlrKYsgyLgsLkqEFs 22 K qLlrKYsg+LgsLkqE++ 678394014 32 FKGQLLRKYSGCLGSLKQELM 52 599****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 9.76 | 31 | 51 | IPR005539 | ELK domain |
SMART | SM01188 | 1.6E-6 | 31 | 52 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.8E-9 | 33 | 52 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.876 | 51 | 114 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-20 | 53 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.0E-13 | 53 | 118 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-28 | 56 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.50E-11 | 63 | 115 | No hit | No description |
Pfam | PF05920 | 5.0E-18 | 71 | 110 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 89 | 112 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MERTGSSSEE LELDANNSNS SFIHPQAEDD EFKGQLLRKY SGCLGSLKQE LMKKRKKGKL 60 PKDARHKLLD WWSRHYKWPY PSEAQKTALA ESTGLDRRQI NNWFINQRKR HWKPSEETQF 120 VAMDAAEAAA HLNNVLGNPF AMNVSAAISQ LPQQL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 55 | LKQELMKKRK |
2 | 52 | 56 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678394014 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889118.1 | 2e-71 | homeobox protein SBH1 | ||||
Swissprot | O22299 | 7e-61 | LET6_SOLLC; Homeobox protein knotted-1-like LET6 | ||||
TrEMBL | Q8GUC4 | 2e-71 | Q8GUC4_HELTU; Putative knotted-1-like protein | ||||
STRING | evm.model.supercontig_152.56 | 6e-73 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6835 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 4e-57 | KNOX/ELK homeobox transcription factor |