PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678392984
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 263aa    MW: 29196.3 Da    PI: 9.6887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678392984genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1887137256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r r++lg++++ae Aa a+++a+ kl+ge
  678392984  87 LYRGVRQRH-WGKWVAEIRLPRN---RIRVWLGTYDSAEAAAYAYDRAAYKLRGE 137
                59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.42E-1786146No hitNo description
SuperFamilySSF541712.88E-2287145IPR016177DNA-binding domain
SMARTSM003801.4E-3487150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3087145IPR001471AP2/ERF domain
PROSITE profilePS5103223.06487144IPR001471AP2/ERF domain
PfamPF008476.9E-1388137IPR001471AP2/ERF domain
PRINTSPR003671.3E-128899IPR001471AP2/ERF domain
PRINTSPR003671.3E-12126146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAGIHANNIG SPLSQIILSS ASSSTLDSIF SYLKDQSTPT KANLYQSPVY NKHRDLVSHK  60
PSIIPPTTLM AEPSFMAKYL ISNKKKLYRG VRQRHWGKWV AEIRLPRNRI RVWLGTYDSA  120
EAAAYAYDRA AYKLRGEYAR LNFPNLRDAT LLGFGDRARI NELKTSVDAK IQAICQKVKR  180
QKTAQRAAKK AGTFPNLSEF PSAPETGISV ATCEAITAEC CNGASSGWDE SGGDVAPPPD  240
MEEYPLARFP SFDPELIWQL IPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1984144263ATERF1
3gcc_A5e-1984144263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678392984
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101035.13e-76LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF061
SwissprotQ8H1E49e-47RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A4D9AEW68e-75A0A4D9AEW6_SALSN; EREBP-like factor
STRINGMigut.A00662.1.p6e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.13e-36ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]