PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678392984 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 29196.3 Da PI: 9.6887 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 87 | 137 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r r++lg++++ae Aa a+++a+ kl+ge 678392984 87 LYRGVRQRH-WGKWVAEIRLPRN---RIRVWLGTYDSAEAAAYAYDRAAYKLRGE 137 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.42E-17 | 86 | 146 | No hit | No description |
SuperFamily | SSF54171 | 2.88E-22 | 87 | 145 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-34 | 87 | 150 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-30 | 87 | 145 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.064 | 87 | 144 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.9E-13 | 88 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-12 | 88 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-12 | 126 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MAGIHANNIG SPLSQIILSS ASSSTLDSIF SYLKDQSTPT KANLYQSPVY NKHRDLVSHK 60 PSIIPPTTLM AEPSFMAKYL ISNKKKLYRG VRQRHWGKWV AEIRLPRNRI RVWLGTYDSA 120 EAAAYAYDRA AYKLRGEYAR LNFPNLRDAT LLGFGDRARI NELKTSVDAK IQAICQKVKR 180 QKTAQRAAKK AGTFPNLSEF PSAPETGISV ATCEAITAEC CNGASSGWDE SGGDVAPPPD 240 MEEYPLARFP SFDPELIWQL IPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-19 | 84 | 144 | 2 | 63 | ATERF1 |
3gcc_A | 5e-19 | 84 | 144 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678392984 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101035.1 | 3e-76 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q8H1E4 | 9e-47 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A4D9AEW6 | 8e-75 | A0A4D9AEW6_SALSN; EREBP-like factor | ||||
STRING | Migut.A00662.1.p | 6e-67 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3601 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 3e-36 | ERF family protein |
Publications ? help Back to Top | |||
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