PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678392773
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 744aa    MW: 82240 Da    PI: 6.7858
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678392773genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1898149556
                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++t+ q++++e+lF+++++p++++r eL+k+lgL  rqVk+WFqNrR++ k
  678392773  98 HRHTTAQIRQMEALFKESPHPDEKQRLELSKRLGLHPRQVKFWFQNRRTQVK 149
                467999******************************************9877 PP
2START154.68.1e-492634852206
                HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                + ++ ++el k+a+ +ep+W +s+    e++n+de++++f  +++      +s+ea+r+sg   + l+ lv+++ld+k qW++ ++    +aet+evi++
  678392773 263 VVNQSMEELSKMATMGEPLWIRSYetgrEILNYDEYVKEFLLQGSetfepkKSIEASRDSGTILAGLPWLVQSFLDVK-QWKKLFPslvvEAETIEVINN 361
                567889**********************************998889********************************.********************* PP

                T....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE.EEEE-EE--SSXXHHHH CS
      START  88 g....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv.twvehvdlkgrlphwll 181
                g     +     a+ q+l+p+vp R  +f R+++ql+  +w+i+dvS+++ ++   +ss+v+ +++pSg++ie+ksnghskv twveh  +++ ++ +l+
  678392773 362 GegdnKDRAILLAKIQMLTPMVPaRQIYFFRHCKQLNTSKWAILDVSIEELEDGI-NSSGVKWRKRPSGCIIEDKSNGHSKVvTWVEHLVCQKTSVCSLY 460
                *****67777778899999***********************************8.8***********************9648**************** PP

                HHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 182 rslvksglaegaktwvatlqrqcek 206
                r +v++gla+ ak+w +tlq+ ce+
  678392773 461 RTVVNTGLAFSAKRWISTLQQECER 485
                ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-2279145IPR009057Homeodomain-like
SuperFamilySSF466898.36E-2082152IPR009057Homeodomain-like
PROSITE profilePS5007117.26591151IPR001356Homeobox domain
SMARTSM003893.5E-1792155IPR001356Homeobox domain
CDDcd000861.01E-1594149No hitNo description
PfamPF000465.4E-1698149IPR001356Homeobox domain
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PROSITE profilePS5084834.258253488IPR002913START domain
SuperFamilySSF559617.55E-24254485No hitNo description
CDDcd088754.85E-78257484No hitNo description
SMARTSM002342.9E-40262485IPR002913START domain
PfamPF018528.1E-38263485IPR002913START domain
SuperFamilySSF559613.71E-12514709No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MSKFSDSEAA AAGDFLGAPT LSLSLAGIFR GSASVDAAHG GGRDEVSAEV SSENSGQGKS  60
RSADDFEFGE GEQGNADDDE EDDDGNGGDK KKKRKRFHRH TTAQIRQMEA LFKESPHPDE  120
KQRLELSKRL GLHPRQVKFW FQNRRTQVKA IQERHENSLL KSEIDRLRDE IKALREIAKT  180
TSCPMCGFPD NHATGGEEQR LRIENSKLRA EVEKLQYINR TYCHGASSNV SLYPCEGGDP  240
ENRSHLVASS SGFQLDKSRI VEVVNQSMEE LSKMATMGEP LWIRSYETGR EILNYDEYVK  300
EFLLQGSETF EPKKSIEASR DSGTILAGLP WLVQSFLDVK QWKKLFPSLV VEAETIEVIN  360
NGEGDNKDRA ILLAKIQMLT PMVPARQIYF FRHCKQLNTS KWAILDVSIE ELEDGINSSG  420
VKWRKRPSGC IIEDKSNGHS KVVTWVEHLV CQKTSVCSLY RTVVNTGLAF SAKRWISTLQ  480
QECERLVFLV ATNVPAKNSS GVPTLAGKKS ILKLAQRMTS SFCRAAGASS SNLWSKISKK  540
TGDGITVASR RNHNDNGEPL GTILSAASCA WFPLSHQTLF DFLRDEQRRH EWDIMFKESI  600
IRLIASLAKG QDRGNAVTCL AMEAGEQKMW LLQDSSTNSS ESLVVYSPVD ISAMESVIAG  660
RELTSIQILP SGFSILPDGI ESKPILITSA SEEKSSGGSV LTVVLQILVS NSSSIKIAAD  720
SVDSISTLVS CTLLSIKKSL QCQD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994KKKKRK
28995KKKKRKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678392773
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072373.10.0homeobox-leucine zipper protein GLABRA 2 isoform X1
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2G9G2L40.0A0A2G9G2L4_9LAMI; Transcription factor PHOX2/ARIX, contains HOX domain
STRINGXP_009338062.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62282328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]