PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678392684
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 1072aa    MW: 117039 Da    PI: 5.5971
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678392684genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.8e-367558472103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk++e+++d++++++isws++++sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k+++e+         w+F+++ F++gkk+ll++ik
     678392684 755 FLKKTFEMVDDPRTDSIISWSSSKTSFVVWDPHAFSSELLPRYFKHNNFSSFVRQLNTYGFRKIDSER---------WQFSNEGFQQGKKHLLKYIK 842
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     678392684 843 RRKQS 847
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-37751844IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.89E-34751844IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-56751844IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-31755844IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-18755778IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-18793805IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340794818IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-18806818IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1072 aa     Download sequence    Send to blast
MQNTTLDSSD GGLTDRPCAQ RRRPIRSRTC DALFRLLSHC RSNLDQVQCQ GDGNDAVLQL  60
GSREKESVVV DVLDAGCSLE RSADLREAAG ELVQAASTGK NYGIGNFREL SLEGNEAVLP  120
VSDHVNLLNG NTCEAAPKKA GELEILVETL TRDCDPETLK SDENACSILD VQMDESGTFP  180
AGDNMFIDDF PEVLRTFMDM DVVVEPSNGG IEANGAGSVA ENIHCDYEQK LNMKEKELEK  240
LMCISSGPAS SSHPNSNVEI EEGEISGDIG DGNSPTGSLS EDVILEGERP GHNLPSSVDY  300
FDEVNGMCND QAVGHSKHGL LDDQEGVDGK NANVRSGSEQ KEYPSLIASS NTTEDIQGDK  360
CNFSHDTVPL TKSKSSLLAP AVASPELSVP QKSALEKGGS SIMSNISGKK TDGSTSFHQK  420
SADAKAPLST PPKLLSATPP KVPSGVSYLR NNELFSGDRH KFRQNGLPLR PSDALGSSGK  480
TVTENAISTV DKLAETHVKV VPRLPRGINF LSFTKNSTDN LNPKVLSSML PSSNQGKGKS  540
VGTPTPSSAA ATPTLHRTPP EGSVIKQGNS PKSNAIVPSN QLPQTIATST ELPSTSFCSP  600
ILMQRAIRST LAFAADLEAP RSSLGRHTGR AWTDPLGFGK ASLVSLMSHI SPRVQPRRSQ  660
MGSVASQAPC IPPQSSPPPC HYTYPSLYPT CRRRNLEGGM AGVGGAFCVK PEFLEEDGRG  720
AEGGGGTCER RRQMWSTFSI DGLKDNETLL QPPPFLKKTF EMVDDPRTDS IISWSSSKTS  780
FVVWDPHAFS SELLPRYFKH NNFSSFVRQL NTYGFRKIDS ERWQFSNEGF QQGKKHLLKY  840
IKRRKQSSLI MMQQGASRSW LDSSKHGVDA ELEKLRMDRI ALQTEVFKLK QNQEAMQHCV  900
TGIAKRLQET EMKQNHILLF MIKYLKNPLF LQSWLEKKRP VMDGGGMTKK RRLESSYVSE  960
PMKPDDDNRP GVQDLATIPS ETHTLFSSSD EQNGENSSEI TSLDSCSENF LLWEKLVEDG  1020
MIFGEERATA ADSAQPTNPF SEFEKLDPLW GDEYGSSYGT NFWSSSIHTL GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-227538483109Heat shock factor protein 2
5d8l_B2e-227538483109Heat shock factor protein 2
5d8l_D2e-227538483109Heat shock factor protein 2
5d8l_F2e-227538483109Heat shock factor protein 2
5d8l_H2e-227538483109Heat shock factor protein 2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1837843LKYIKRR
2936951KKRPVMDGGGMTKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678392684
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-59heat shock transcription factor A2