PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678392530
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRF
Protein Properties Length: 438aa    MW: 50086.4 Da    PI: 8.3255
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678392530genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.5e-2576119144
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  678392530  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 119
                79***************************************986 PP
2QLQ57.15.4e-201146237
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
               +FTa+Q+q+L++Q+l+yKyL +++P+P +Ll+ i++
  678392530 11 PFTASQWQELEHQALVYKYLTSGMPIPTDLLFNIRR 46
               9*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.3E-111046IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-141144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.9611146IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94176120IPR014977WRC domain
PfamPF088794.4E-2177119IPR014977WRC domain
PfamPF070111.9E-36339417IPR009741Protein of unknown function DUF1313
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MMNGSGRTRY PFTASQWQEL EHQALVYKYL TSGMPIPTDL LFNIRRSFDS SRFLLQPNPN  60
IVGWGSFHMG FGRKIDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RNRSRKPVEI  120
LSSLSSSHAP PPSADPVHVS SAAMHSYSSN LLFPEFSYSR AQEVVATNFF LDSNSSTRSP  180
PNDFRNKYGD RSEEHSFFSE SSSNSGGMRT VTGTNESYWK TGIGSSLSQL QQQNSNNSSD  240
IQTRTNKIHS LNDQMGSHNK LDYFKHETYE EQPKKVMHLF LDEWRVKEDE GEKAPATITQ  300
IPNSMHDFFL NPKCLEEQRE WVLADRDFPM DGGEGFSLDG KTLRSFHRSF SQVQNILDQN  360
RLLINEINQN HESKRPDNLS RNVGLIRELN NNIRRVVDLY ADLSNNFTKS VDASSDADGD  420
SYPGDGRLNP GHKRLRPA
Cis-element ? help Back to Top
SourceLink
PlantRegMap678392530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093817.18e-92growth-regulating factor 1 isoform X1
RefseqXP_020553366.18e-92growth-regulating factor 1 isoform X2
TrEMBLA0A2G9GF811e-82A0A2G9GF81_9LAMI; Uncharacterized protein
STRINGXP_010047491.13e-71(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-52growth-regulating factor 5