PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678392421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | SBP | ||||||||
Protein Properties | Length: 274aa MW: 30514.4 Da PI: 9.0128 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.3 | 1.3e-39 | 91 | 167 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++dl+eak yhrrh++Ce hsk+p v+v+g+e rfCqqCsrfh+lsefD++krsCrrrL++hn+rrr+ + 678392421 91 CCQVEGCSVDLKEAKGYHRRHRICENHSKSPRVIVQGMESRFCQQCSRFHALSEFDDKKRSCRRRLSDHNARRRRLH 167 6*************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.3E-34 | 85 | 153 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.043 | 89 | 166 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.14E-37 | 90 | 171 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.5E-32 | 92 | 165 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MEDKGICMGS SQLEWNDVVV HDGNQKQICF SVSRSNDHGA ACCSSSSSNY LMATHQMGCL 60 PPYKKPKSSP LAVSPKKPKI SSSAHHAGNP CCQVEGCSVD LKEAKGYHRR HRICENHSKS 120 PRVIVQGMES RFCQQCSRFH ALSEFDDKKR SCRRRLSDHN ARRRRLHVET IRLRPPHASS 180 SFYDLMKMEQ NGLLNRLPFS PPEPLDRRTI CFSSNEMESP VSDHMIFLNA SSLLSTNSGS 240 TTYNPATARE SFCHGNTVFA TGSTGFPAMS GTSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 87 | 165 | 6 | 84 | squamosa promoter binding protein-like 4 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 164 | KKRSCRRRLSDHNARRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678392421 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022888133.1 | 7e-48 | squamosa promoter-binding-like protein 12 isoform X1 | ||||
Refseq | XP_022888134.1 | 7e-48 | squamosa promoter-binding-like protein 12 isoform X2 | ||||
Refseq | XP_023874058.1 | 7e-47 | LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 3 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-38 | squamosa promoter binding protein-like 2 |