PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678391618
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 223aa    MW: 25660.3 Da    PI: 9.4936
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678391618genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.45.4e-5761331128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lppGfrFhPtdeelv +yL +kv+g+k+e+ +vi+evd+yk+ePwdLp k  + +++ ewyf+s+rd+ky++g+r+nrat+sgyWkatgkd++v s +++
  678391618   6 LPPGFRFHPTDEELVAYYLYRKVTGRKIEI-DVIPEVDLYKCEPWDLPdKsFLPSKDLEWYFYSPRDRKYPNGSRTNRATRSGYWKATGKDRAVES-GKR 103
                79****************************.99**************96434555777*************************************9.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                +vg+kktLv+y+grap+g +tdWvmheyrl
  678391618 104 TVGMKKTLVYYRGRAPNGIRTDWVMHEYRL 133
                ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-652151IPR003441NAC domain
PROSITE profilePS5100561.2236150IPR003441NAC domain
PfamPF023655.9E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGQMTLPPGF RFHPTDEELV AYYLYRKVTG RKIEIDVIPE VDLYKCEPWD LPDKSFLPSK  60
DLEWYFYSPR DRKYPNGSRT NRATRSGYWK ATGKDRAVES GKRTVGMKKT LVYYRGRAPN  120
GIRTDWVMHE YRLAADSPSD SYALCRVFKK NIAMTNDVEA SAAAVKITET TPTTTPEMSA  180
SNFSLESPFT QVKIYLNFTI PVPGMIPVWI FSLPQHDSRF IFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-58215011168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678391618
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095829.19e-95NAC transcription factor 29
SwissprotQ9FFI54e-79NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A314UQ034e-91A0A314UQ03_PRUYE; NAC domain-containing protein 86
TrEMBLA0A498JYR84e-91A0A498JYR8_MALDO; Uncharacterized protein
STRINGXP_008371963.17e-92(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46212442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.13e-86NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]