PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678391273
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRF
Protein Properties Length: 290aa    MW: 31923.1 Da    PI: 8.026
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678391273genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.92.3e-2590134145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrg++rsrk++e+
  678391273  90 DPEPGRCRRTDGKKWRCSRDVVAGHKYCERHVHRGKNRSRKHVET 134
                79****************************************997 PP
2QLQ21.95.3e-091142233
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33
               +F+ +Q+q ++  +l+++++++++ vPpeLl 
  678391273 11 HFSVSQWQDFELHALIFRHIVNGAAVPPELLH 42
               6999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5166614.0041146IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94990134IPR014977WRC domain
PfamPF088791.1E-2091133IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNVVQQQAGL HFSVSQWQDF ELHALIFRHI VNGAAVPPEL LHLLNKSITT PSSTDSSSSS  60
LYYVSNPFQY FPHYHSALMQ SGYWGKAAMD PEPGRCRRTD GKKWRCSRDV VAGHKYCERH  120
VHRGKNRSRK HVETPTALFD NGAADDDDRK TADSAEGGGA GTAQFRSMNL LQFQQRAPET  180
KCPFQVLNDS GGRDRTLRPF FDDWPRSGNE PNDGSRSLTT NLSISVAGNS DFSLKLGTGN  240
EDEPRSQAGS NARERNWIAT WESASNTLGG PLAEALRSSS SNPYSASGAT
Cis-element ? help Back to Top
SourceLink
PlantRegMap678391273
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094403.13e-88growth-regulating factor 3
TrEMBLA0A2G9HGY72e-82A0A2G9HGY7_9LAMI; Uncharacterized protein
STRINGXP_006481829.17e-81(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.13e-57growth-regulating factor 4