PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678390607 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 28028.6 Da PI: 8.5521 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d ++++G+g +W + +++ g++R++k+c++rw++yl 678390607 14 KGPWSPEEDAKLKDFIHKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 35.8 | 1.8e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd + + G++ W+ Ia ++ gRt++++k++w++ 678390607 69 GEFSDEEDRVICSLYSTIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.427 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.01E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.75E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.127 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-7 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGRAPCCDKS AVKKGPWSPE EDAKLKDFIH KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRVIC SLYSTIGSRW SIIAGQLPGR TDNDIKNYWN TKLKKKLLSA 120 GSNKGLPAPP PPLAAAAQPH FPPAAFYGEP SSLSTPQSSF FFNNSNPTSF QSDFQSLLSY 180 CSNSPSGYQI TFGEVKNEYL IPDRTLTGGP VDQKQPLDNV TQQQQMQLEE VKQLIDSSPG 240 IHGIDDSFLY YY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-27 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678390607 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019225349.1 | 4e-82 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A2G9GX66 | 4e-81 | A0A2G9GX66_9LAMI; Transcription factor, Myb superfamily | ||||
TrEMBL | A0A314KTV5 | 8e-81 | A0A314KTV5_NICAT; Transcription factor myb36 | ||||
STRING | XP_009600706.1 | 7e-80 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-75 | myb domain protein 36 |