PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678389517 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TCP | ||||||||
Protein Properties | Length: 276aa MW: 31221.1 Da PI: 9.6536 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 138.9 | 4.3e-43 | 56 | 175 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksq 101 ++kk rhski T++g+RdRRvRls+ +a++fFdLq++L fdk+s t++WLl+++k+aikel++++ + ++ ss+ +++++ k++ ++ 678389517 56 TAKKNRHSKINTAQGPRDRRVRLSIGIARKFFDLQEMLEFDKPSDTLDWLLTNSKTAIKELVQNKEK-----------LGQGITSSPLECSKQVKESVER 144 78**************************************************************332...........3333445557889999999999 PP TCP 102 ksaasalnlakesrakarararertrekmrikn 134 ++++ ++lakesrakar rarert+ekm+ik+ 678389517 145 HPNS--SSLAKESRAKARDRARERTKEKMCIKS 175 9999..*************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-32 | 56 | 133 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.196 | 58 | 116 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 0.0041 | 134 | 172 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 11.746 | 153 | 170 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MFSKTAFTVN DEEIILHPQT RMLPAHHFVS PTPPDYEMNG DLSGVTNAAA SETKRTAKKN 60 RHSKINTAQG PRDRRVRLSI GIARKFFDLQ EMLEFDKPSD TLDWLLTNSK TAIKELVQNK 120 EKLGQGITSS PLECSKQVKE SVERHPNSSS LAKESRAKAR DRARERTKEK MCIKSLAEEH 180 KRGANMQFSE LLAGSSNSNP SFLNEDSLIR RPGFGDLIHE PGTKPKNPCF PIIQQNLAVT 240 RDFNSNYTTS STADWDNFAS EPNVYVIFDQ HKFINR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678389517 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554786.1 | 2e-48 | transcription factor CYCLOIDEA | ||||
TrEMBL | A0A096ZGF6 | 3e-59 | A0A096ZGF6_9LAMI; TCP transcription factor (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4333 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.1 | 5e-30 | TCP family protein |